miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 123 bits (62), Expect = 5e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 19 gtgaggtagtagattgtatagttgtagggtagtgattttatcctgtgtagaagataacta 78
||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||
Sbjct: 6 gtgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagataacta 65
Query: 79 tacaatctattgccttccctga 100
||||||||||||||||||||||
Sbjct: 66 tacaatctattgccttccctga 87
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 115 bits (58), Expect = 1e-25
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 15 cagtgtgaggtagtagattgtatagttgtagggtagtgattttatcctgtgtagaagata 74
|||| |||||||||||||||||||||| | ||||||||||||| ||||| | |||||||
Sbjct: 2 cagtatgaggtagtagattgtatagttttggggtagtgattttgccctgtttggaagata 61
Query: 75 actatacaatctattgccttccctga 100
||||||||||||||||||||||||||
Sbjct: 62 actatacaatctattgccttccctga 87
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 95.6 bits (48), Expect = 1e-19
Identities = 79/88 (89%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 14 gcagtgtgaggtagtagattgtatagttgt-agggtagtgattttatcctgtgtagaaga 72
|||| ||||||||||||||||||||||| | |||||||| |||||||||| | | |||
Sbjct: 1 gcagagtgaggtagtagattgtatagtttttagggtagtaattttatccttttccggaga 60
Query: 73 taactatacaatctattgccttccctga 100
||||||||||||||||||||||||||||
Sbjct: 61 taactatacaatctattgccttccctga 88
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 67 agaagataactatacaatctattgccttccctga 100
||||||||||||||||| ||| ||||||||||||
Sbjct: 53 agaagataactatacaacctactgccttccctga 86
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio (zebrafish)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 gataactatacaatctattgccttccctga 100
|||||||||||| |||||||||||||||||
Sbjct: 57 gataactatacagtctattgccttccctga 86
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes (Japanese
medaka)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 gataactatacaatctattgccttccctga 100
|||||||||||| |||||||||||||||||
Sbjct: 58 gataactatacagtctattgccttccctga 87
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 19 gtgaggtagtagattgtatagttgtagggtagtgattttatcctgtgtagaagataacta 78
|||||||||||| |||| ||||| |||||||||||||| || || |||||||||
Sbjct: 6 gtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataacta 65
Query: 79 tacaatctattgccttccctga 100
||||| ||| ||||||||||||
Sbjct: 66 tacaacctactgccttccctga 87
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 tgaggtagtagattgtatagttgtagggt 48
|||||||||||||||||||||| ||||||
Sbjct: 7 tgaggtagtagattgtatagttttagggt 35
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 tgaggtagtagattgtatagttgtagggt 48
|||||||||||||||||||||| ||||||
Sbjct: 7 tgaggtagtagattgtatagttttagggt 35
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 tgaggtagtagattgtatagttgt 43
||||||||||||||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgt 30
>RF00027;let-7;AAPY01663784.1/776-859 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 aggtagtagattgtatagttgtagggt 48
|||||||||||||||||||| ||||||
Sbjct: 9 aggtagtagattgtatagttctagggt 35
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 gataactatacaatctattgccttcc 96
|||||||||||| |||||||||||||
Sbjct: 59 gataactatacagtctattgccttcc 84
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 gataactatacaatctattgccttcc 96
|||||||||||| |||||||||||||
Sbjct: 59 gataactatacagtctattgccttcc 84
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 gataactatacaatctattgccttcc 96
|||||||||||| |||||||||||||
Sbjct: 58 gataactatacagtctattgccttcc 83
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 gataactatacaatctattgccttcc 96
|||||||||||| |||||||||||||
Sbjct: 55 gataactatacagtctattgccttcc 80
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 agaagataactatacaatctattgccttccctga 100
||||||||||||||||| || ||||||||||||
Sbjct: 53 agaagataactatacaacatactgccttccctga 86
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 19 gtgaggtagtagattgtatagttgtagggt 48
|||||||||||| |||||||||| ||||||
Sbjct: 6 gtgaggtagtaggttgtatagttttagggt 35
