miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CR735130.17/58450-58371 7955:Danio rerio
(zebrafish)
Length = 80
Score = 159 bits (80), Expect = 8e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 8 gtggaatgaggtagtagtttgtatagtttgggatcacaccagatctgggagataactata 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggaatgaggtagtagtttgtatagtttgggatcacaccagatctgggagataactata 60
Query: 68 cagcctactgtctttctcac 87
||||||||||||||||||||
Sbjct: 61 cagcctactgtctttctcac 80
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 129 bits (65), Expect = 7e-30
Identities = 78/81 (96%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 8 gtggaatgaggtagtagtttgtatagttt-gggatcacaccagatctgggagataactat 66
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gtgggatgaggtagtagtttgtatagttttgggatcacaccagatctgggagataactat 60
Query: 67 acagcctactgtctttctcac 87
|||| ||||||||||||||||
Sbjct: 61 acagtctactgtctttctcac 81
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 125 bits (63), Expect = 1e-28
Identities = 73/75 (97%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 13 atgaggtagtagtttgtatagtttg-ggatcacaccagatctgggagataactatacagc 71
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6 atgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactatacagc 65
Query: 72 ctactgtctttctca 86
|||||||||||||||
Sbjct: 66 ctactgtctttctca 80
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 13 atgaggtagtagtttgtatagtttg-ggatcacaccagatctgggagataactatacagc 71
|||||||||||| ||||||||||| || ||||||| ||||||||||||||||||
Sbjct: 6 atgaggtagtaggttgtatagttttagggtcacacccacactgggagataactatacaat 65
Query: 72 ctactgtctttct 84
|||||||||||||
Sbjct: 66 ctactgtctttct 78
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 atgaggtagtagtttgtatagtttg-ggatcacaccagatctgggagataactatacagc 71
|||||||||||| ||||||||||| || | | ||| |||| ||||||||||||||||
Sbjct: 6 atgaggtagtagattgtatagttttagggttataccccatcttggagataactatacagt 65
Query: 72 ctactgtctttc 83
||||||||||||
Sbjct: 66 ctactgtctttc 77
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 56.0 bits (28), Expect = 8e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 13 atgaggtagtagtttgtatagtttg-ggatcacaccagatctgggagataactatacagc 71
|||||||||||| ||||||||||| || ||| ||| | ||| |||||||||||||||
Sbjct: 6 atgaggtagtagattgtatagttttagggtcatacccggtcttggagataactatacaat 65
Query: 72 ctactgtctttc 83
||||||||||||
Sbjct: 66 ctactgtctttc 77
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 tctgggagataactatacagcctactgtctttc 83
|||| ||||||||||||||| ||||||||||||
Sbjct: 47 tctgtgagataactatacagtctactgtctttc 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgaggtagtagtttgtatagtttggg 39
||||||||||| ||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttggg 32
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 52 ctgggagataactatacagcctactgtctttc 83
|||||||||||||||||| ||||||||||||
Sbjct: 48 ctgggagataactatacaatctactgtctttc 79
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 gagataactatacagcctactgtctttc 83
||||||||||||||| ||||||||||||
Sbjct: 51 gagataactatacagtctactgtctttc 78
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 gagataactatacagcctactgtctttc 83
||||||||||||||| ||||||||||||
Sbjct: 51 gagataactatacagtctactgtctttc 78
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgaggtagtagtttgtatagtttggg 39
||||||||||| ||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttggg 32
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tgaggtagtagtttgtatagtttggg 39
||||||||||| ||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtttggg 32
