miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 180 bits (91), Expect = 3e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 13 ttgtggtgaggtagtaagttgtgttgttgttggggatcagtatagtatggcccttgaagg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtggtgaggtagtaagttgtgttgttgttggggatcagtatagtatggcccttgaagg 60
Query: 73 agataactatacaatttactgccttccataa 103
|||||||||||||||||||||||||||||||
Sbjct: 61 agataactatacaatttactgccttccataa 91
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgttggggatca 51
|||||||||||||||||||||||||||||||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgttggggatca 39
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 14 tgtggtgaggtagtaagttgtgttgttgttgggga 48
||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgtggtgaggtagtaagttgtgttgttgtagggga 36
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
||||||||||||||||| ||||||||||||
Sbjct: 55 aggagataactatacaacttactgccttcc 84
>RF00027;let-7;CAAB01003893.1/10262-10170 31033:Takifugu rubripes
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 tgtggtgaggtagtaagttgtgttgttgttgggg 47
||||||||||||||||||||||||||||| ||||
Sbjct: 2 tgtggtgaggtagtaagttgtgttgttgtggggg 35
>RF00027;let-7;AANH01002616.1/64077-64170 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 94
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgtggtgaggtagtaagttgtgttgttgt 42
||||||||||||||| |||||||||||||
Sbjct: 2 tgtggtgaggtagtatgttgtgttgttgt 30
>RF00027;let-7;AAPE01289140.1/8994-8905 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtattgttgt 30
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgttggg 46
|||||||||||||||||| |||||| ||||
Sbjct: 5 ggtgaggtagtaagttgtattgttgctggg 34
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
||||||||||||||||| |||||||||||
Sbjct: 54 aggagataactatacaacctactgccttcc 83
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 ggtgaggtagtaagttgtgttgttgt 42
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtattgttgt 30
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
|||||||||||||||||| || ||||||||
Sbjct: 54 aggagataactatacaatctattgccttcc 83
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggagataactatacaatttactgccttcc 99
||||||||||||||||| |||||||||||
Sbjct: 54 aggagataactatacaacctactgccttcc 83
