miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04035801.1/1686-1772 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 125 bits (63), Expect = 1e-28
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 5 actggctgaggtagtagtttgtgctgttggttgggatgtgacattgcccgttatggagat 64
||||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||
Sbjct: 1 actggctgaggtagtagtttgtgctgttggttgggttgagacactgcccgctatggagat 60
Query: 65 gactgcgcaagctactcccttgc 87
|||||||||||||||| ||||||
Sbjct: 61 gactgcgcaagctactgccttgc 83
>RF00027;let-7;CAAB01000076.1/26328-26242 31033:Takifugu rubripes
Length = 87
Score = 83.8 bits (42), Expect = 4e-16
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 6 ctggctgaggtagtagtttgtgctgttggttgggatgtgacattgcccgttatggagatg 65
||||||||||||||| |||||||||||||| ||| ||| ||||||| || ||||||||
Sbjct: 2 ctggctgaggtagtattttgtgctgttggtcgggttgtcctattgccccttgtggagatg 61
Query: 66 actgcgcaagctactcccttgc 87
||||||||| ||||| ||||||
Sbjct: 62 actgcgcaatctactgccttgc 83
>RF00027;let-7;AANH01007768.1/28424-28513 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 79.8 bits (40), Expect = 6e-15
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 11 tgaggtagtagtttgtgctgttggttgggatgtgacattg-cccgttatggagatgactg 69
||||||||||||||||||||||||| ||| ||| | |||| |||||| ||||||||||||
Sbjct: 7 tgaggtagtagtttgtgctgttggtcgggttgtcatattgccccgttttggagatgactg 66
Query: 70 cgcaagctactccctt 85
||||| ||||| ||||
Sbjct: 67 cgcaatctactgcctt 82
>RF00027;let-7;BAAE01140557.1/855-941 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 6 ctggctgaggtagtagtttgtgctgttggttgggatgtgacattgcccgttatggagatg 65
|||||||||||||||||||||||||||||| ||| || ||||| | |||||| ||
Sbjct: 2 ctggctgaggtagtagtttgtgctgttggtcgggtcgtcgtgctgcccctgatggaggtg 61
Query: 66 actgcgcaagctactcccttgcc 88
||||||||| ||||| |||||||
Sbjct: 62 actgcgcaatctactgccttgcc 84
>RF00027;let-7;BAAF04117990.1/808-722 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 ggctgaggtagtagtttgtgctgttggt 35
||||||||||||||||||||||||||||
Sbjct: 4 ggctgaggtagtagtttgtgctgttggt 31
