miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AL935208.8/111380-111468 7955:Danio rerio
(zebrafish)
Length = 89
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 ggttgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggttgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagcta 63
Query: 61 actgtacagactactgccttgcc 83
|||||||||||||||||||||||
Sbjct: 64 actgtacagactactgccttgcc 86
>RF00027;let-7;AANH01007698.1/145537-145624 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 7 tgaggtagttgtttgtacag-tttgagggtctgttattctgccccaaacaggagctaact 65
Query: 64 gtaca 68
|||||
Sbjct: 66 gtaca 70
>RF00027;let-7;BAAE01044355.1/4683-4770 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
|||||||||||||||||||| ||| ||||||||| ||||||||| | |||||||||||
Sbjct: 7 tgaggtagttgtttgtacag-tttgagggtctgtgattctgcccgatacaggagctaact 65
Query: 64 gtaca 68
|||||
Sbjct: 66 gtaca 70
>RF00027;let-7;AAVX01039717.1/937-849 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 gaggtagttgtttgtacagttt 26
||||||||||||||||||||||
Sbjct: 8 gaggtagttgtttgtacagttt 29
