miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 121 bits (61), Expect = 2e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 22 gacatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatgt 81
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 9 gacatacttctttatatgcccatatgaacacgagcaactatggaatgtaaagaagtatgt 68
Query: 82 atcccaggt 90
|||||||||
Sbjct: 69 atcccaggt 77
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 81.8 bits (41), Expect = 2e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 23 acatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatgta 82
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgta 69
Query: 83 t 83
|
Sbjct: 70 t 70
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 77.8 bits (39), Expect = 3e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 21 agacatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatg 80
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 8 agacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatg 67
Query: 81 tat 83
|||
Sbjct: 68 tat 70
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 73.8 bits (37), Expect = 4e-13
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 23 acatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatgta 82
|||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatacccatatgaacttaa-cagctatggaatgtaaagaagtatgta 68
Query: 83 t 83
|
Sbjct: 69 t 69
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 65.9 bits (33), Expect = 1e-10
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 21 agacatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatg 80
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 8 agacatacttctttatatgcccatatggagctcgg-agctatggaatgtaaagaagtatg 66
Query: 81 tatcccagg 89
|||| ||||
Sbjct: 67 tatctcagg 75
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 65.9 bits (33), Expect = 1e-10
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 14 gcttggtagacatacttctttatatgcccatatgaacaaga-gcagctatggaatgtaaa 72
|||||| ||||||||||||||||| ||||||||| || | ||| ||||||||||||||
Sbjct: 1 gcttgggagacatacttctttatacgcccatatggacttgctgca-ctatggaatgtaaa 59
Query: 73 gaagtatgtatcccagg 89
|||||||||| ||||||
Sbjct: 60 gaagtatgtaccccagg 76
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 21 agacatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatg 80
||||||||||||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct: 8 agacatacttctttataatcccatatggacctgctaagctatggaatgtaaagaagtatg 67
Query: 81 tatcccagg 89
|||| ||||
Sbjct: 68 tatctcagg 76
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 55/61 (90%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 23 acatacttctttatatgcccatatgaacaagagca-gctatggaatgtaaagaagtatgt 81
|||||||||||||| | |||||||||||| || | ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacat-agaatgctatggaatgtaaagaagtatgt 68
Query: 82 a 82
|
Sbjct: 69 a 69
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 23 acatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatgta 82
|||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaaggctatggaatgtaaagaagtatgta 69
Query: 83 t 83
|
Sbjct: 70 t 70
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 23 acatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatgta 82
|||||||||||||| | |||||||||||| | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacataaat-gctatggaatgtaaagaagtatgta 68
Query: 83 t 83
|
Sbjct: 69 t 69
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 23 acatacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatgta 82
|||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69
Query: 83 t 83
|
Sbjct: 70 t 70
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 56.0 bits (28), Expect = 9e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 24 catacttctttatatgcccatatgaacaagagcagctatggaatgtaaagaagtatgtat 83
|||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgaa-atgctttgctatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 agctatggaatgtaaagaagtatgtat 83
|||||||||||||||||||||||||||
Sbjct: 45 agctatggaatgtaaagaagtatgtat 71
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatgtat 83
|||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtat 73
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatgtat 83
|||||||||||||||||||||||||
Sbjct: 47 ctatggaatgtaaagaagtatgtat 71
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgtat 83
||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtat 70
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgtat 83
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgta 82
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgta 82
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgta 82
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgta 82
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgta 82
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgta 82
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
(western clawed frog)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 acatacttctttatatgcccata 45
|||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccata 32
>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
(chicken)
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatgtatcc 85
|||||||||| |||||||||||||||
Sbjct: 49 tatggaatgttaagaagtatgtatcc 74
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
