miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes (Japanese
medaka)
Length = 60
Score = 95.6 bits (48), Expect = 1e-19
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 41 atctttggttatctagctgtatgagtgtgctggccgtcataaagctagataaccgaaagt 100
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtgttctgctcgtcataaagctagataaccgaaagt 60
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 69.9 bits (35), Expect = 8e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgtgctggccgtcataaagctag 88
||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgtactgagcgtcataaagctag 48
>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 69.9 bits (35), Expect = 8e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgtgctggccgtcataaagctagataaccgaaagt 100
||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtttattcaccgtcataaagctaaataaccgaaagt 60
>RF00237;mir-9;AAGU02809341.1/1530-1589 9785:Loxodonta africana
(African savanna elephant)
Length = 60
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 47 ggttatctagctgtatgagtgtgctggccgtcataaagctagataaccgaaagt 100
|||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 7 ggttatctagctgtatgagtgtattttccttcataaagctagataaccgaaagt 60
>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis (cape
rock hyrax)
Length = 62
Score = 65.9 bits (33), Expect = 1e-10
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgtg-ctg-gccgtcataaagctagataaccgaaag 99
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgccacagagccgtcataaagctagataaccgaaag 61
Query: 100 t 100
|
Sbjct: 62 t 62
>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes (Japanese
medaka)
Length = 62
Score = 60.0 bits (30), Expect = 8e-09
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgt--gctggccgtcataaagctagataaccgaaag 99
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgttaaatacctgtcataaagctagataaccgaaag 61
Query: 100 t 100
|
Sbjct: 62 t 62
>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 61
Score = 58.0 bits (29), Expect = 3e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 41 atctttggttatctagctgtatgagt-gtgctggccgtcataaagctagataaccgaaag 99
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtggtgtggagtctcataaagctagataaccgaaag 60
Query: 100 t 100
|
Sbjct: 61 t 61
>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgtgctggccgtcataaagctagataaccgaa 97
||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 2 tctttggttatctagctgtatgagtgtatgtgatgtcataaagctagagaaccgaa 57
>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 62
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 atctttggttatctagctgtatgagtg 67
|||||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtg 27
>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 atctttggttatctagctgtatgagtg 67
|||||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtg 27
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tcataaagctagataaccgaaagt 100
||||||||||||||||||||||||
Sbjct: 39 tcataaagctagataaccgaaagt 62
>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
(pea aphid)
Length = 67
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgt 68
|||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgt 28
>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
gambiae str. PEST
Length = 62
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgt 68
|||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgt 28
>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 atctttggttatctagctgtatgagt 66
||||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
mojavensis
Length = 61
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtg 67
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtg 67
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
(zebrafish)
Length = 59
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagt 66
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
(ghost shark)
Length = 61
Score = 50.1 bits (25), Expect = 8e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagtgtgct-ggccgtcataaagctagataaccgaa 97
||||||||| |||||||||||||||||| | || ||||||||||||| |||||||
Sbjct: 2 tctttggttttctagctgtatgagtgtgttataccttcataaagctagacaaccgaa 58
>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
(red flour beetle)
Length = 64
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgagt 66
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 ctttggttatctagctgtatgagt 66
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABRR01432464.1/48-109 30538:Lama pacos (alpaca)
Length = 62
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tcataaagctagataaccgaaagt 100
||||||||||||||||||||||||
Sbjct: 39 tcataaagctagataaccgaaagt 62
>RF00237;mir-9;ABRT010326462.1/47-105 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tcataaagctagataaccgaaagt 100
||||||||||||||||||||||||
Sbjct: 36 tcataaagctagataaccgaaagt 59
>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
floridae (Florida lancelet)
Length = 61
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatgag 65
||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgag 25
>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
Length = 60
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 tttggttatctagctgtatgagtg 67
||||||||||||||||||||||||
Sbjct: 4 tttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
Length = 61
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatga 64
|||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatga 24
>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
corporis (human body louse)
Length = 60
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tctttggttatctagctgtatg 63
||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatg 23
