miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 101 bits (51), Expect = 1e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtgaaaaaataacattcacagattcgattct 62
|||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgaagaacgctcaatcacagattcgattct 60
Query: 63 aggggagtatatggt 77
|||||||||||||||
Sbjct: 61 aggggagtatatggt 75
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtgaaaaaataacattcacagattcgattct 62
||||||||||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattct 60
Query: 63 aggggagtatatgg 76
||||||||||||||
Sbjct: 61 aggggagtatatgg 74
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 81.8 bits (41), Expect = 1e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtgaaaaaataacattcacagattcgattct 62
|||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaattggtgtgatgaaaccagattcacagattcgattct 60
Query: 63 agggg 67
|||||
Sbjct: 61 agggg 65
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtgaaaaaataacattcacagattcgattct 62
||||||||||||||||||||||||| ||||| | | | | ||||||||||||| || |
Sbjct: 1 ctatatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggtttt 60
Query: 63 aggggagtatatgg 76
||||||||||||||
Sbjct: 61 aggggagtatatgg 74
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtga 35
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtgaaaa 38
|||||||||||||||||| |||||||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgtgaaaa 36
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtga 35
|||||| ||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
|||||| |||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtg 34
|||||| |||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtga 35
|||||| ||||||||||| ||||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtga 33
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tatataccctgtagaaccgaatttgtgt 33
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 tatatataccctgtagaaccgaatttgtgtga 35
||||| |||||||||||| |||||||||||||
Sbjct: 2 tatatgtaccctgtagaatcgaatttgtgtga 33
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgt 33
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 accctgtagaaccgaatttgtgt 33
|||||||||||||||||||||||
Sbjct: 9 accctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 taccctgtagaaccgaatttgtgtga 35
||||||||||| ||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgtga 33
>RF00104;mir-10;BAAE01206467.1/1361-1287 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 ataccctgtagaaccgaatttgtgtg 34
||||||||||||||||||| ||||||
Sbjct: 7 ataccctgtagaaccgaatgtgtgtg 32
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 accctgtagaaccgaatttgtgtga 35
|||||||||| ||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgtga 33
>RF00104;mir-10;AB232920.1/58331-58253 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 3 ctatatataccctgtagaaccgaatttgtgtga 35
|||||| ||||||||||| ||| ||||||||||
Sbjct: 1 ctatatctaccctgtagatccggatttgtgtga 33
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 42 aacattcacagattcgattctaggggagtatat 74
|||| ||||| ||||| ||||||||||||||||
Sbjct: 44 aacaatcacaaattcgcttctaggggagtatat 76
