miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 151 bits (76), Expect = 2e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgtccaaaacatcaaaatcgcaaatacgtctc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtccaaaacatcaaaatcgcaaatacgtctc 60
Query: 69 tacaggaatacatggg 84
||||||||||||||||
Sbjct: 61 tacaggaatacatggg 76
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgtccaaaacatcaaaatcgcaaatacgtctc 68
||||||||||||||||||||||||||||||| || | || | |||||||| ||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt-taatagataacaatcgcaagtacgtctc 59
Query: 69 tacaggaatacatggg 84
||||||||||||||||
Sbjct: 60 tacaggaatacatggg 75
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgtccaaaacatcaaaatcgcaaatacgtctc 68
||||||||||||||||||||||||||||||| | ||| | |||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtggagtaca-agcattcgcaaatacgtctc 59
Query: 69 tacaggaatacatggg 84
||||||||||||||||
Sbjct: 60 tacaggaatacatggg 75
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
||||||| |||||||||||||||||||||||
Sbjct: 1 ctatatgcaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 tatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||| |||||||||||
Sbjct: 2 tatatgtaccctgtagaatcgaatttgtgt 31
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tatgtaccctgtagaaccgaatttgtgt 39
||||||||||||||| ||||||||||||
Sbjct: 4 tatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| |||||||||||||||||| |||||
Sbjct: 1 ctatatataccctgtagaaccgaatgtgtgt 31
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||||||||||| ||||
Sbjct: 1 ctatatataccctgtagaaccgaattggtgt 31
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
