miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;BX294379.5/157235-157150 7955:Danio rerio
(zebrafish)
Length = 86
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 cctgtcggtactgtagcagcacagaatggtttgtgagttataacgggggtgcaggccgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cctgtcggtactgtagcagcacagaatggtttgtgagttataacgggggtgcaggccgta 61
Query: 61 ctgtgctgcggcaacaacgacagg 84
||||||||||||||||||||||||
Sbjct: 62 ctgtgctgcggcaacaacgacagg 85
>RF00455;mir-15;CU151883.12/129517-129600 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tgtagcagcacagaatggtttgtg 35
||||||||||||||||||||||||
Sbjct: 13 tgtagcagcacagaatggtttgtg 36
>RF00455;mir-15;AAVX01075355.1/1195-1112 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tgtagcagcacagaatggtttgtgagtt 39
|||||||||||| |||||||||||||||
Sbjct: 13 tgtagcagcacataatggtttgtgagtt 40
>RF00455;mir-15;BAAE01057882.1/4-73 8090:Oryzias latipes (Japanese
medaka)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 ctgtagcagcacagaatggtttgtgagttat 41
|||||||||||| |||||||||||| |||||
Sbjct: 3 ctgtagcagcacggaatggtttgtgggttat 33
>RF00455;mir-15;CAAB01000586.1/28074-28158 31033:Takifugu rubripes
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 ctgtagcagcacagaatggtttgtgagtta 40
|||||||||||| |||||||||||| ||||
Sbjct: 12 ctgtagcagcacggaatggtttgtgggtta 41