miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;CR478286.10/109802-109722 7955:Danio rerio
(zebrafish)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 4 tcctcgctttagcagcacgtaaatattggtgtgttatagtcaaggccaaccccaatatta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctcgctttagcagcacgtaaatattggtgtgttatagtcaaggccaaccccaatatta 60
Query: 64 tgtgtgctgcttcagtaaggc 84
|||||||||||||||||||||
Sbjct: 61 tgtgtgctgcttcagtaaggc 81
>RF00254;mir-16;CAAB01000783.1/48863-48783 31033:Takifugu rubripes
Length = 81
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 8 cgctttagcagcacgtaaatattggtgtgt 37
||||||||||||||||||||||||||||||
Sbjct: 5 cgctttagcagcacgtaaatattggtgtgt 34
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 gctttagcagcacgtaaatattggtgt 35
|||||||||||||||||||||||||||
Sbjct: 6 gctttagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 cgctttagcagcacgtaaatattggtgt 35
|||| |||||||||||||||||||||||
Sbjct: 5 cgctctagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gctttagcagcacgtaaatattgg 32
||||||||||||||||||||||||
Sbjct: 6 gctttagcagcacgtaaatattgg 29
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tagcagcacgtaaatattggtgt 35
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tagcagcacgtaaatattggtgt 35
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 cgctttagcagcacgtaaatattggtgtgt 37
|||| |||||||||||||||||||| ||||
Sbjct: 5 cgctgtagcagcacgtaaatattggcgtgt 34
