miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;FP016183.6/26569-26489 7955:Danio rerio (zebrafish)
Length = 81
Score = 161 bits (81), Expect = 3e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 30 gcctggctgtagcagcacgtaaatattggagtcaaagcacttgcgaatcctccagtattg 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctggctgtagcagcacgtaaatattggagtcaaagcacttgcgaatcctccagtattg 60
Query: 90 accgtgctgctggagttaggc 110
|||||||||||||||||||||
Sbjct: 61 accgtgctgctggagttaggc 81
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 63.9 bits (32), Expect = 5e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 35 gctgtagcagcacgtaaatattggagtcaaagcact-tgcgaatcctccagtattgaccg 93
||||||||||||||||||||||||||| || || || || || ||||||||||||| ||
Sbjct: 6 gctgtagcagcacgtaaatattggagttaaggctctctgtgatacctccagtattgatcg 65
Query: 94 tgctgctg 101
||||||||
Sbjct: 66 tgctgctg 73
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 36 ctgtagcagcacgtaaatattggagtcaaagcacttgc-gaatcctccagtattgaccgt 94
|||||||||||||||||||||||||| || |||||| ||| |||||| |||||| |||
Sbjct: 7 ctgtagcagcacgtaaatattggagttaa--gacttgctgaagcctccaatattgatcgt 64
Query: 95 gctgctg 101
|||||||
Sbjct: 65 gctgctg 71
>RF00254;mir-16;ABPK01051643.1/651-732 57307:Labeotropheus
fuelleborni
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 36 ctgtagcagcacgtaaatattggagt 61
||||||||||||||||||||||||||
Sbjct: 7 ctgtagcagcacgtaaatattggagt 32
>RF00254;mir-16;BAAF04019869.1/1288-1368 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 gctgtagcagcacgtaaatattgg 58
||||||||||||||||||||||||
Sbjct: 6 gctgtagcagcacgtaaatattgg 29
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattggagt 61
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;ABQF01022934.1/40019-40098 59729:Taeniopygia
guttata
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattggagt 61
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattggagt 61
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagt 32
>RF00254;mir-16;BAAF04054536.1/5691-5613 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattggag 60
||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggag 31
