miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;CU855930.12/140191-140111 7955:Danio rerio
(zebrafish)
Length = 81
Score = 157 bits (79), Expect = 5e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 28 cttgctttagcagcatgtaaatattggagttactccttggccaatgcctccaatattgct 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cttgctttagcagcatgtaaatattggagttactccttggccaatgcctccaatattgct 62
Query: 88 cgtgctgctgaagcaagaa 106
|||||||||||||||||||
Sbjct: 63 cgtgctgctgaagcaagaa 81
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 58.0 bits (29), Expect = 3e-08
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 35 tagcagcatgtaaatattggagttactccttggccaatgcctccaatattgctcgtgctg 94
|||||||| |||||||||||||||| |||| || ||||||||||||| ||||||||
Sbjct: 10 tagcagcacgtaaatattggagttaagacttgctgaa-gcctccaatattgatcgtgctg 68
Query: 95 ctgaagcaa 103
|||||||||
Sbjct: 69 ctgaagcaa 77
>RF00254;mir-16;AAVX01075355.1/994-914 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 1e-07
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 30 tgctttagcagcatgtaaatattggagttactccttggccaatgcctccaatattgctcg 89
||||||||||||| ||||||||||||||||| | || |||||||| ||| |||| | |
Sbjct: 5 tgctttagcagcacgtaaatattggagttacgctttttccaatgcccccagtattaattg 64
Query: 90 tgctgctg 97
||||||||
Sbjct: 65 tgctgctg 72
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 30 tgctttagcagcatgtaaatattggagtta 59
||||||||||||| ||||||||||| ||||
Sbjct: 5 tgctttagcagcacgtaaatattggtgtta 34
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 ttagcagcatgtaaatattggagtta 59
||||||||| ||||||||||||||||
Sbjct: 9 ttagcagcacgtaaatattggagtta 34
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 30 tgctttagcagcatgtaaatattggagtta 59
|||| |||||||| ||||||||||||||||
Sbjct: 5 tgctgtagcagcacgtaaatattggagtta 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 74 cctccaatattgctcgtgctgctgaagcaa 103
|||||| ||||| |||||||||||||||||
Sbjct: 50 cctccagtattgatcgtgctgctgaagcaa 79
