miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 2 tcactgtagtgtcaaagtgcttacagtgcaggtagttcaatataatctactgcagtggag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcactgtagtgtcaaagtgcttacagtgcaggtagttcaatataatctactgcagtggag 60
Query: 62 gcacttcaagctttaccgtga 82
|||||||||||||||||||||
Sbjct: 61 gcacttcaagctttaccgtga 81
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 9 agtgtcaaagtgcttacagtgcaggtagttcaatataatctactgcagtggaggcactt 67
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 8 agtgtcaaagtgcttacagtgcaggtagttttatcaaatctactgcagtgaaggcactt 66
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 2 tcactgtagtgtcaaagtgcttacagtgcaggtagttcaat-ataatctactgcagtgga 60
||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |
Sbjct: 1 tcactgtagtgtcaaagtgcttacagtgcaggtagttttctaaaaatctactgcagtgaa 60
Query: 61 ggcactt 67
|||||||
Sbjct: 61 ggcactt 67
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 75.8 bits (38), Expect = 8e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagttcaatataatctactgcagtggaggcacttcaa 70
||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtgtcttaaaatctactgcagtgaaggcacttcaa 69
Query: 71 gc 72
||
Sbjct: 70 gc 71
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 7 gtagtgtcaaagtgcttacagtgcaggtagttcaatataatctactgcagtggaggcact 66
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct: 6 gtagtgtcaaagtgcttacagtgcaggtagtttgatgacatctactgcagtgaaggcact 65
Query: 67 t 67
|
Sbjct: 66 t 66
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 65.9 bits (33), Expect = 7e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 6 tgtagtgtcaaagtgcttacagtgcaggtagttcaatataat--ctactgcagtggaggc 63
|||| ||||||||||||||||||||||||||| | || ||| ||||||||||||||||
Sbjct: 5 tgtattgtcaaagtgcttacagtgcaggtagtactatgcaatacctactgcagtggaggc 64
Query: 64 actt 67
||||
Sbjct: 65 actt 68
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 65.9 bits (33), Expect = 7e-11
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 6 tgtagtgtcaaagtgcttacagtgcaggtagttcaatataat--ctactgcagtggaggc 63
|||| ||||||||||||||||||||||||||| || | ||| ||||||||||||||||
Sbjct: 5 tgtattgtcaaagtgcttacagtgcaggtagtacatttaaatacctactgcagtggaggc 64
Query: 64 actt 67
||||
Sbjct: 65 actt 68
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 6 tgtagtgtcaaagtgcttacagtgcaggtagttcaat--ataatctactgcagtggaggc 63
|||| ||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 5 tgtattgtcaaagtgcttacagtgcaggtagtattatggaatatctactgcagtggaggc 64
Query: 64 acttc 68
|||||
Sbjct: 65 acttc 69
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 52/59 (88%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt--tcaatataatctactgcagtggaggcactt 67
||||||||||||||||||||||||||| | ||| || ||||||||||| ||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 68
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagttc 39
||||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagttc 38
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtt 38
||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtt 37
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AAWZ01041388.1/821-905 28377:Anolis carolinensis
(green anole)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 agtgtcaaagtgcttacagtgcaggtagtt 38
|||||||||||||| | |||||||||||||
Sbjct: 8 agtgtcaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
