miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 151 bits (76), Expect = 2e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 9 cccggtcagttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccggtcagttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatg 60
Query: 69 caaaactgattgtggc 84
||||||||||||||||
Sbjct: 61 caaaactgattgtggc 76
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 12 ggtcagttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatgcaa 71
|||||||||||||||||||||| ||||||| | | ||| |||||||||||||||||||
Sbjct: 4 ggtcagttttgctggtttgcatccagctttaactattgtttgctgtgcaaatccatgcaa 63
Query: 72 aactgatt 79
||||||||
Sbjct: 64 aactgatt 71
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 75.8 bits (38), Expect = 8e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 12 ggtcagttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatgcaa 71
|||||||||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct: 4 ggtcagttttgctggtttgcattcagctttaaccagcgtttgctgtgcaaatccatgcaa 63
Query: 72 aactga 77
||||||
Sbjct: 64 aactga 69
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 69.9 bits (35), Expect = 5e-12
Identities = 60/66 (90%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 12 ggtcagttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatgcaa 71
|||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct: 4 ggtcagttttgctggtttgcattcagctttgttg-ctgt--gctgtgcaaatccatgcaa 60
Query: 72 aactga 77
||||||
Sbjct: 61 aactga 66
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtgg 83
|||||||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtgg 79
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtg 82
||||||||||||||||||||||||||||||
Sbjct: 46 gctgtgcaaatccatgcaaaactgattgtg 75
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtg 82
||||||||||||||||||||||||||||||
Sbjct: 48 gctgtgcaaatccatgcaaaactgattgtg 77
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtg 82
||||||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtg 82
||||||||||||||||||||||||||||||
Sbjct: 51 gctgtgcaaatccatgcaaaactgattgtg 80
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtg 82
||||||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtg 82
||||||||||||||||||||||||||||||
Sbjct: 47 gctgtgcaaatccatgcaaaactgattgtg 76
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtggc 84
||||||||||||||||||||||||| ||||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgactgtggc 75
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 56.0 bits (28), Expect = 8e-08
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 12 ggtcagttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatgcaa 71
|||||||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct: 4 ggtcagttttgctggtttgcatccagctttgttacc---gcgctgtgcaaatccatgcaa 60
Query: 72 aactga 77
||||||
Sbjct: 61 aactga 66
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgatt 79
|||||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactgatt 68
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtgg 83
||||||||||||||||||||||||| |||||
Sbjct: 41 gctgtgcaaatccatgcaaaactgaatgtgg 71
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtgg 83
||||||||||||||||||||||||| |||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgactgtgg 73
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 16 agttttgctggtttgcattcagcttttaagactgtgcgctgtgcaaatccatgcaaaact 75
|||||||||||||||| |||||||||| | || |||||||||||||||||||||||
Sbjct: 8 agttttgctggtttgctttcagcttttcaatctact-gctgtgcaaatccatgcaaaact 66
Query: 76 gat 78
|||
Sbjct: 67 gat 69
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgattgtg 82
||||||||||||||||||||||||| ||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgactgtg 78
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactgat 78
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgat 68
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactga 77
|||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactga 73
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaactga 77
|||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactga 67
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gctgtgcaaatccatgcaaaact 75
|||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 tgtgcaaatccatgcaaaactgattgtggc 84
|||||||||| |||||||||||| ||||||
Sbjct: 34 tgtgcaaatctatgcaaaactgactgtggc 63
>RF00245;mir-19;AADN02029366.1/35306-35235 9031:Gallus gallus
(chicken)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 tgtgcaaatccatgcaaaactgattgtggc 84
|||||||||| ||||||||||||| |||||
Sbjct: 43 tgtgcaaatctatgcaaaactgatggtggc 72
>RF00245;mir-19;BAAF04006740.1/10225-10154 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 tgtgcaaatccatgcaaaactgattgtggc 84
|||||||||| ||||||||||||| |||||
Sbjct: 43 tgtgcaaatctatgcaaaactgatggtggc 72
