miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 149 bits (75), Expect = 8e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 19 tggggtgagttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggggtgagttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgc 60
Query: 79 aaaactcgctgcgcc 93
|||||||||||||||
Sbjct: 61 aaaactcgctgcgcc 75
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 54.0 bits (27), Expect = 4e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
||||||||||| |||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 8 agttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaact 64
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 40 tgctgtgcaaatccatgcaaaact 63
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaact 65
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaact 65
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaact 64
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
|||||||| || |||||||| ||||| |||| | |||||||||||||||||||||||
Sbjct: 8 agttttgctggtttgcatccagctttgttaccgc--gctgtgcaaatccatgcaaaact 64
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaact 67
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaact 67
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 43 tgctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 46 gctgtgcaaatccatgcaaaact 68
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaact 71
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaact 71
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 48 gctgtgcaaatccatgcaaaact 70
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaact 71
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaact 71
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 51 gctgtgcaaatccatgcaaaact 73
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaact 71
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaact 65
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 47 gctgtgcaaatccatgcaaaact 69
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaact 67
