miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;BX511227.7/25357-25277 7955:Danio rerio
(zebrafish)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 8 tcctggcagttccaaagtgctcacagtgcaggtagtgccagtggatctactgcaatgtct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctggcagttccaaagtgctcacagtgcaggtagtgccagtggatctactgcaatgtct 60
Query: 68 gcacttcaagtattgccggac 88
|||||||||||||||||||||
Sbjct: 61 gcacttcaagtattgccggac 81
>RF00051;mir-17;AANH01005996.1/21109-21189 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 16 gttccaaagtgctcacagtgcaggtagtgccagtggatctactgcaatgtctgcacttca 75
||||||||||||||||||||||||||| || |||||||||||| | | |||||||||
Sbjct: 9 gttccaaagtgctcacagtgcaggtagggcacacggatctactgcagtttgtgcacttca 68
Query: 76 agtattgccgg 86
||||||||||
Sbjct: 69 ggtattgccgg 79
>RF00051;mir-17;FP015951.3/28915-28833 9823:Sus scrofa (pig)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 ggcagttccaaagtgctcacagtgcaggtag 42
|||||| ||||||||||||||||||||||||
Sbjct: 5 ggcagtaccaaagtgctcacagtgcaggtag 35
>RF00051;mir-17;BAAE01067504.1/1887-1807 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 cctggcagttccaaagtgctcacagtgcaggtagt 43
||||||||||| |||||||||||||||||| ||||
Sbjct: 2 cctggcagttcaaaagtgctcacagtgcagatagt 36
>RF00051;mir-17;AAEX02004024.1/7928-8010 9615:Canis lupus
familiaris (dog)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 ccaaagtgctcacagtgcaggtagt 43
|||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 tcctggcagttccaaagtgctcacagtgcaggtagt 43
||||| |||| |||||||||||| ||||||||||||
Sbjct: 1 tcctgacagtaccaaagtgctcatagtgcaggtagt 36
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 8 tcctggcagttccaaagtgctcacagtgcaggtagt 43
|||||| ||| |||||||||||| ||||||||||||
Sbjct: 1 tcctggtagtgccaaagtgctcatagtgcaggtagt 36
