miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00658;mir-21;BAAF04044466.1/2035-1963 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 97.6 bits (49), Expect = 4e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 102 aggctgtctgaca 114
|||||||||||||
Sbjct: 61 aggctgtctgaca 73
>RF00658;mir-21;CAAB01003431.1/24512-24584 31033:Takifugu rubripes
Length = 73
Score = 73.8 bits (37), Expect = 6e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 44 tcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgtag 103
||||||||||||||||||||||||||||||||| ||| | ||| ||| |||||||||
Sbjct: 3 tcagatagcttatcagactggtgttggctgttaggttcccatggcaacagcagtctgtaa 62
Query: 104 gctgtctga 112
|||||||||
Sbjct: 63 gctgtctga 71
>RF00658;mir-21;AAVX01193435.1/262-191 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 69.9 bits (35), Expect = 9e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgtta 76
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgtta 35
>RF00658;mir-21;BAAF04048171.1/11412-11340 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 49 tagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgtaggctgt 108
|||||||||||||||||||||| ||| |||| || |||| ||||| ||||||| ||||
Sbjct: 8 tagcttatcagactggtgttggaggttccatttgcacggcaacaacggtctgtaagctgg 67
Query: 109 ctgaca 114
||||||
Sbjct: 68 ctgaca 73
>RF00658;mir-21;AANH01008078.1/292800-292872 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 73
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 43 gtcagatagcttatcagactggtgttggctgtt 75
||||| |||||||||||||||||||||||||||
Sbjct: 2 gtcagctagcttatcagactggtgttggctgtt 34
>RF00658;mir-21;AADN02025785.1/47934-47863 9031:Gallus gallus
(chicken)
Length = 72
Score = 50.1 bits (25), Expect = 9e-06
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
|||| ||||||||||||||||| ||||| ||||| | || | ||| ||||||||| ||
Sbjct: 1 tgtcggatagcttatcagactgatgttgactgttgga-tctcatggcaacaacagtcggt 59
Query: 102 aggctgtctgaca 114
|||||||||||||
Sbjct: 60 aggctgtctgaca 72
>RF00658;mir-21;CR848791.15/19987-19917 7955:Danio rerio
(zebrafish)
Length = 71
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 tagcttatcagactggtgttggct 72
||||||||||||||||||||||||
Sbjct: 8 tagcttatcagactggtgttggct 31
