miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 123 bits (62), Expect = 4e-28
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 gctgacctgcagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctg 60
||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 2 gctgacccacagcagttcttcactggcaagctttatgttctcgtgcaccagctaaagctg 61
Query: 61 ccagctgaagaactgttgtggt 82
||||||||||||||||||||||
Sbjct: 62 ccagctgaagaactgttgtggt 83
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 91.7 bits (46), Expect = 1e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 9 gcagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgccagctga 68
|||||||||||||| ||||||||||||||||||| | || ||||||||||||||| |||
Sbjct: 10 gcagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttga 69
Query: 69 agaactgttg 78
||||||||||
Sbjct: 70 agaactgttg 79
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 9 gcagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgccagctga 68
|||| ||||||||| |||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 10 gcagtagttcttcagtggcaagctttatgtcct---gacccagctaaagctgccagttga 66
Query: 69 agaactgttg 78
||||||||||
Sbjct: 67 agaactgttg 76
>RF00653;mir-22;AAFR03054554.1/22241-22157 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 85
Score = 63.9 bits (32), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 10 cagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgccagctgaa 69
||||||||||||| |||| ||||||||||| | || ||||||||||||||||| ||||
Sbjct: 11 cagcagttcttcagtggcgagctttatgtctt---gtcccagctaaagctgccagttgaa 67
Query: 70 gaactg 75
||||||
Sbjct: 68 gaactg 73
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 51 gctaaagctgccagctgaagaactgttgtggt 82
||||||||||||||||||||||||||||||||
Sbjct: 52 gctaaagctgccagctgaagaactgttgtggt 83
>RF00653;mir-22;BAAF04066287.1/5156-5069 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 10 cagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgccagctgaa 69
|||| |||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct: 11 cagctgttcttcactggcaagctttatgtttctatacacatgctaaagctgccagctgaa 70
Query: 70 gaactg 75
||||||
Sbjct: 71 gaactg 76
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gttcttcactggcaagctttatgtcct 41
||||||||||||| |||||||||||||
Sbjct: 16 gttcttcactggctagctttatgtcct 42
>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 gttcttcactggcaagctttatgtcc 40
||||||||||||| ||||||||||||
Sbjct: 16 gttcttcactggctagctttatgtcc 41
