miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
(zebrafish)
Length = 84
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 gttacttcacagtcgttcttcactggctagctttatgtggcagcaccttaaagctgccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttacttcacagtcgttcttcactggctagctttatgtggcagcaccttaaagctgccag 61
Query: 61 ttgaagagctgttgtgggtaac 82
||||||||||||||||||||||
Sbjct: 62 ttgaagagctgttgtgggtaac 83
>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 85.7 bits (43), Expect = 8e-17
Identities = 71/80 (88%), Gaps = 4/80 (5%)
Strand = Plus / Plus
Query: 7 tcacagtcgttcttcactggctagctttatgt----ggcagcaccttaaagctgccagtt 62
|||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct: 8 tcacagtcgttcttcactggctagctttatgtcccacgccccaccgtaaagctgccagtt 67
Query: 63 gaagagctgttgtgggtaac 82
|||||||||||||| |||||
Sbjct: 68 gaagagctgttgtgtgtaac 87
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 73.8 bits (37), Expect = 3e-13
Identities = 70/81 (86%), Gaps = 5/81 (6%)
Strand = Plus / Plus
Query: 7 tcacagtcgttcttcactggctagctttatgt-----ggcagcaccttaaagctgccagt 61
|||||||||||||||||||||||||||||||| | | ||| |||||||||||||
Sbjct: 8 tcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagt 67
Query: 62 tgaagagctgttgtgggtaac 82
||||||||||||||| |||||
Sbjct: 68 tgaagagctgttgtgtgtaac 88
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 54 taaagctgccagttgaagaactgttg 79
