miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 5 tggcggggagggttcctggcaccgtgatttggtggataaacagaaatgaaaatcacattg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcggggagggttcctggcaccgtgatttggtggataaacagaaatgaaaatcacattg 60
Query: 65 ccagggatttccactcctgc 84
||||||||||||||||||||
Sbjct: 61 ccagggatttccactcctgc 80
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 5 tggcggggagggttcctggcaccgtgatttggtggataaacagaaatgaaaatcacattg 64
||||||||||||||||||||||||||||||| || | ||| | ||| ||||||||||||
Sbjct: 1 tggcggggagggttcctggcaccgtgatttgatgcacaaagacaaacaaaaatcacattg 60
Query: 65 ccagggatttccac 78
||||||||||||||
Sbjct: 61 ccagggatttccac 74
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 83.8 bits (42), Expect = 3e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 9 ggggagggttcctggcaccgtgatttggtggataaacagaaatgaaaatcacattgccag 68
||||||||||||||||||||||||||| || | ||| | ||| ||||||||||||||||
Sbjct: 5 ggggagggttcctggcaccgtgatttgatgcacaaagaaaaac-aaaatcacattgccag 63
Query: 69 ggatttccactcct 82
||||||||||||||
Sbjct: 64 ggatttccactcct 77
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 75.8 bits (38), Expect = 8e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 5 tggcggggagggttcctggcaccgtgatttggtggataaacagaaatgaaaatcacattg 64
||||||||||| ||||||| |||||||||| || | ||| ||||| ||||||||||||
Sbjct: 1 tggcggggaggattcctggtgccgtgatttgatgcacaaaaagaaagaaaaatcacattg 60
Query: 65 ccagggatttccac 78
||||||||||||||
Sbjct: 61 ccagggatttccac 74
>RF00642;mir-23;CAAB01001656.1/44846-44768 31033:Takifugu rubripes
Length = 79
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 tggcggggagggttcctggcaccgtgat 32
||||||||||||||||||||||||||||
Sbjct: 1 tggcggggagggttcctggcaccgtgat 28
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttcca 77
|||||||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatttcca 68
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttcca 77
|||||||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatttcca 68
>RF00642;mir-23;AANH01005378.1/81475-81399 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 49 aatgaaaatcacattgccagggatttcca 77
|||| ||||||||||||||||||||||||
Sbjct: 42 aatgtaaatcacattgccagggatttcca 70
>RF00642;mir-23;ABRO01400204.1/368-441 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttcca 67
>RF00642;mir-23;ABRQ01065900.1/2548-2621 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttcca 67
>RF00642;mir-23;BAAE01159439.1/298-222 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 47 aaatcacattgccagggatttcca 70
>RF00642;mir-23;AAWZ01000886.1/16013-15939 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 aatcacattgccagggatttcca 77
|||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttcca 68
>RF00642;mir-23;ABPM01028978.1/952-875 106582:Maylandia zebra
(zebra mbuna)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 aatcacattgccagggatttcca 77
|||||||||||||||||||||||
Sbjct: 49 aatcacattgccagggatttcca 71
>RF00642;mir-23;BAAE01102385.1/318-394 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 aatcacattgccagggatttcca 77
|||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttcca 70
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 44 aaaatcacattgccagggattaccac 69
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 47 aaaatcacattgccagggattaccac 72
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 43 aaaatcacattgccagggattaccac 68
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 44 aaaatcacattgccagggattaccac 69
