miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;BAAE01102385.1/318-394 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 103 bits (52), Expect = 4e-22
Identities = 71/76 (93%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 10 cggccaggggaattcctggcagagtgatttttaaaccta-atgactgaatcacattgcca 68
|||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||
Sbjct: 1 cggccaggggaattcctggcagagtgatttttgagactacaggactgaatcacattgcca 60
Query: 69 gggatttccaatggct 84
||||||||||||||||
Sbjct: 61 gggatttccaatggct 76
>RF00642;mir-23;ABPM01028978.1/952-875 106582:Maylandia zebra
(zebra mbuna)
Length = 78
Score = 81.8 bits (41), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 17 gggaattcctggcagagtga---tttttaaacctaatgactgaatcacattgccagggat 73
|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct: 7 gggaattcctggcagagtgactttttttaaactagaggactgaatcacattgccagggat 66
Query: 74 ttccaatggct 84
|||||||||||
Sbjct: 67 ttccaatggct 77
>RF00642;mir-23;AAWZ01000886.1/16013-15939 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 gaatcacattgccagggatttccaa 79
|||||||||||||||||||||||||
Sbjct: 45 gaatcacattgccagggatttccaa 69
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttccaa 69
>RF00642;mir-23;ABRO01400204.1/368-441 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 45 aatcacattgccagggatttccaa 68
>RF00642;mir-23;ABRQ01065900.1/2548-2621 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 45 aatcacattgccagggatttccaa 68
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttccaa 69
>RF00642;mir-23;AANH01005378.1/81475-81399 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttccaa 71
>RF00642;mir-23;BAAE01159439.1/298-222 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttccaa 71
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttcca 78
|||||||||||||||||||||||
Sbjct: 51 aatcacattgccagggatttcca 73
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttcca 78
|||||||||||||||||||||||
Sbjct: 51 aatcacattgccagggatttcca 73
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttcca 78
|||||||||||||||||||||||
Sbjct: 50 aatcacattgccagggatttcca 72
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttcca 78
|||||||||||||||||||||||
Sbjct: 51 aatcacattgccagggatttcca 73
