miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 149 bits (75), Expect = 6e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 2 cagctggagggattcctggcagagtgatttgggattatatcataaaatcacattgccagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagctggagggattcctggcagagtgatttgggattatatcataaaatcacattgccagg 60
Query: 62 gatttccaaccagct 76
|||||||||||||||
Sbjct: 61 gatttccaaccagct 75
>RF00642;mir-23;BAAE01159439.1/298-222 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 68/75 (90%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 4 gctggagggattcctggcagagtgatttgggatt-atatcata-aaatcacattgccagg 61
|||||||||||||||||||||||||||||| | || |||| ||||||||||||||||
Sbjct: 3 gctggagggattcctggcagagtgatttggttctgatgtcatgtaaatcacattgccagg 62
Query: 62 gatttccaaccagct 76
|||||||||||||||
Sbjct: 63 gatttccaaccagct 77
>RF00642;mir-23;AANH01005378.1/81475-81399 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaaccagct 76
|||||||||||||||||||||||||||||||
Sbjct: 47 aaatcacattgccagggatttccaaccagct 77
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttccaac 71
|||||||||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatttccaac 70
>RF00642;mir-23;ABRQ01065900.1/2548-2621 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaacc 70
>RF00642;mir-23;AAWZ01000886.1/16013-15939 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 aatcacattgccagggatttccaacca 73
|||||||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttccaacca 72
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 14 ttcctggcagagtgatttgggattatatcataaaatcacattgccagggatttccaacc 72
||||||||||||||||||| | ||| |||||||||||||||||||||| ||||||
Sbjct: 13 ttcctggcagagtgatttgatttaataatgtaaaatcacattgccagggattaccaacc 71
>RF00642;mir-23;ABRO01400204.1/368-441 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaac 71
||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaac 69
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttcca 69
|||||||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatttcca 73
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttcca 69
|||||||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatttcca 73
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttcca 69
|||||||||||||||||||||||||
Sbjct: 48 aaaatcacattgccagggatttcca 72
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttcca 69
|||||||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatttcca 73
>RF00642;mir-23;ABPM01028978.1/952-875 106582:Maylandia zebra
(zebra mbuna)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aatcacattgccagggatttccaa 70
||||||||||||||||||||||||
Sbjct: 49 aatcacattgccagggatttccaa 72
>RF00642;mir-23;BAAE01102385.1/318-394 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aatcacattgccagggatttccaa 70
||||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttccaa 71
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||| ||||||
Sbjct: 45 aaatcacattgccagggattaccaacc 71
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 ataaaatcacattgccagggatt 65
|||||||||||||||||||||||
Sbjct: 41 ataaaatcacattgccagggatt 63
>RF00642;mir-23;AAPY01721327.1/893-821 37347:Tupaia belangeri
(northern tree shrew)
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaac 71
||||||||||||||| ||||||||||
Sbjct: 43 aaatcacattgccagagatttccaac 68
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggatt 64
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatt 65
|||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggatt 67
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatt 65
|||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatt 64
