miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 101 bits (51), Expect = 1e-21
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 2 tggctgtgtgggttcttggcatgctgatttgtgactgtagtnnnnnnnnntcacattgcc 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tggctgtgtgggttcttggcatgctgatttgtgactgtagtaaaaaaaaatcacattgcc 60
Query: 62 agggattaccacactacc 79
||||||||||||||||||
Sbjct: 61 agggattaccacactacc 78
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 ctgtgtgggttcttggcatgctgatttgtgac 36
|||||||||||| |||||||||||||||||||
Sbjct: 4 ctgtgtgggttcctggcatgctgatttgtgac 35
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 48 tcacattgccagggattaccac 69
>RF00642;mir-23;AAPN01152921.1/1403-1329 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 9 tgggttcctggcatgctgatttgtgact 36
>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
(northern tree shrew)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 9 tgggttcctggcatgctgatttgtgact 36
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 44 tcacattgccagggattaccac 65
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccacac 75
||||||||||||||||||||||||
Sbjct: 47 tcacattgccagggattaccacac 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 ggctgtgtgggttcttggcatgctgatttgtgact 37
||||||| |||||| |||| |||||||||||||||
Sbjct: 2 ggctgtgagggttcctggcgtgctgatttgtgact 36
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccaca 74
|||||||||||||||||||||||
Sbjct: 48 tcacattgccagggattaccaca 70
