miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00178;mir-24;CR847548.8/141549-141614 7955:Danio rerio
(zebrafish)
Length = 66
Score = 131 bits (66), Expect = 3e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 39 ctcccgtgcctactgagctgattacagtactgtgcaaacactggctcagttcagcaggaa 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcccgtgcctactgagctgattacagtactgtgcaaacactggctcagttcagcaggaa 60
Query: 99 caggag 104
||||||
Sbjct: 61 caggag 66
>RF00178;mir-24;BAAF04040483.1/10387-10453 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 67.9 bits (34), Expect = 3e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 44 gtgcctactgagctgatta-cagtactgtgcaaacactggctcagttcagcaggaacagg 102
||||||||||||||||||| |||| || | || ||||||||||||||||||||||||||
Sbjct: 6 gtgcctactgagctgattatcagtcctatagaaccactggctcagttcagcaggaacagg 65
Query: 103 ag 104
||
Sbjct: 66 ag 67
>RF00178;mir-24;AAKN02038501.1/43560-43494 10141:Cavia porcellus
(domestic guinea pig)
Length = 67
Score = 61.9 bits (31), Expect = 2e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 39 ctcccgtgcctactgagctgattacagtactgt-gcaaacactggctcagttcagcagga 97
|||| ||||||||||||||||| |||| || | | | ||||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcttgtacacactggctcagttcagcagga 60
Query: 98 acaggag 104
|||||||
Sbjct: 61 acaggag 67
>RF00178;mir-24;CT027840.6/8959-9024 7955:Danio rerio (zebrafish)
Length = 66
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 cactggctcagttcagcaggaacaggag 104
||||||||||||||||||||||||||||
Sbjct: 39 cactggctcagttcagcaggaacaggag 66
>RF00178;mir-24;AANH01005378.1/80152-80082 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 73 caaacactggctcagttcagcaggaacaggag 104
||||||||||||||||||||||||||| ||||
Sbjct: 40 caaacactggctcagttcagcaggaaccggag 71
>RF00178;mir-24;AAVX01198958.1/114-181 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 cactggctcagttcagcaggaacaggag 104
||||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacaggag 68
>RF00178;mir-24;ABRQ01065900.1/2864-2931 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacaggag 104
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>RF00178;mir-24;AAWZ01000886.1/15313-15246 28377:Anolis carolinensis
(green anole)
Length = 68
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacaggag 104
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>RF00178;mir-24;AADN02067827.1/6632-6699 9031:Gallus gallus
(chicken)
Length = 68
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacaggag 104
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>RF00178;mir-24;BAAF04082680.1/2546-2479 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacaggag 104
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>RF00178;mir-24;AAPY01721327.1/524-457 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacagga 103
||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacagga 67
>RF00178;mir-24;ABRO01400204.1/704-771 10020:Dipodomys ordii (Ord's
kangaroo rat)
Length = 68
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 cactggctcagttcagcaggaacagg 102
||||||||||||||||||||||||||
Sbjct: 41 cactggctcagttcagcaggaacagg 66
>RF00178;mir-24;CU138547.13/98214-98280 7955:Danio rerio (zebrafish)
Length = 67
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacagg 102
|||||||||||||||||||||||||
Sbjct: 41 actggctcagttcagcaggaacagg 65
>RF00178;mir-24;CAAB01008725.1/106-172 31033:Takifugu rubripes
Length = 67
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 76 acactggctcagttcagcaggaacaggag 104
|||||||||||||||||||||||| ||||
Sbjct: 39 acactggctcagttcagcaggaaccggag 67
>RF00178;mir-24;CU855875.13/13048-13115 7955:Danio rerio (zebrafish)
Length = 68
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 ctggctcagttcagcaggaacagg 102
||||||||||||||||||||||||
Sbjct: 43 ctggctcagttcagcaggaacagg 66
>RF00178;mir-24;BAAE01102385.1/1423-1489 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 ctggctcagttcagcaggaacagg 102
||||||||||||||||||||||||
Sbjct: 42 ctggctcagttcagcaggaacagg 65
>RF00178;mir-24;AANN01357153.1/1098-1031 9365:Erinaceus europaeus
(western European hedgehog)
Length = 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacaggag 104
|||||||||||||||||||||| ||||
Sbjct: 42 actggctcagttcagcaggaaccggag 68
>RF00178;mir-24;BAAF04038250.1/1131-1201 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 actggctcagttcagcaggaacaggag 104
|||||||||||||||||||||| ||||
Sbjct: 45 actggctcagttcagcaggaaccggag 71
