miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;CR388015.14/128267-128194 7955:Danio rerio
(zebrafish)
Length = 74
Score = 147 bits (74), Expect = 4e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 31 caacctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggtt 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggtt 60
Query: 91 acttgcactgggtt 104
||||||||||||||
Sbjct: 61 acttgcactgggtt 74
>RF00244;mir-26;AAPN01398538.1/2438-2512 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 71.9 bits (36), Expect = 2e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 33 acctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttac 92
|||||||||||||||||||||||||||| |||| || | |||||||||||| ||||||
Sbjct: 3 acctggttcaagtaatccaggataggctgtgtgcgctcagattggcctgttctcggttac 62
Query: 93 ttgc 96
||||
Sbjct: 63 ttgc 66
>RF00244;mir-26;CAAE01014542.1/1090180-1090107 99883:Tetraodon
nigroviridis
Length = 74
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 37 ggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttacttgc 96
|||||||||||||||||||||||| |||| || ||||||||| ||| || ||||||||
Sbjct: 7 ggttcaagtaatccaggataggctgtgtgtacgcaggttggcctattcgtgattacttgc 66
Query: 97 actgg 101
|||||
Sbjct: 67 actgg 71
>RF00244;mir-26;AADN02000236.1/60671-60744 9031:Gallus gallus
(chicken)
Length = 74
Score = 60.0 bits (30), Expect = 8e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 33 acctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttac 92
|||||||||||||||||||||||||||| | | | | | |||||| |||||||||||
Sbjct: 3 acctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttac 62
Query: 93 ttgcactggg 102
||||||||||
Sbjct: 63 ttgcactggg 72
>RF00244;mir-26;AAFR03066353.1/7590-7517 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 74
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 33 acctggttcaagtaatccaggataggct 60
||||||||||||||||||||||||||||
Sbjct: 3 acctggttcaagtaatccaggataggct 30
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggctt 61
||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctt 31
>RF00244;mir-26;AANH01005795.1/17049-17122 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 56.0 bits (28), Expect = 1e-07
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 37 ggttcaagtaatccaggataggctttgtg-gactagggttggcctgttcttggttacttg 95
|||||||||||||||||||||||||| || | || | |||||||||| |||| |||||||
Sbjct: 7 ggttcaagtaatccaggataggctttctgcgtct-gtgttggcctgtgcttgattacttg 65
Query: 96 cact 99
||||
Sbjct: 66 cact 69
>RF00244;mir-26;AAVX01037532.1/3546-3619 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 33 acctggttcaagtaatccaggataggct 60
||||||||||||||||||||||||||||
Sbjct: 3 acctggttcaagtaatccaggataggct 30
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggct 30
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01008588.1/20720-20793 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 35 ctggttcaagtaatccaggataggctttgtg 65
|||||||||||||||||||||||||| ||||
Sbjct: 5 ctggttcaagtaatccaggataggctgtgtg 35
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggct 30
>RF00244;mir-26;BAAE01145746.1/1134-1208 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 32 aacctggttcaagtaatccaggataggcttt 62
|||| ||||||||||||||||||||||||||
Sbjct: 2 aaccaggttcaagtaatccaggataggcttt 32
>RF00244;mir-26;AC098806.3/13416-13344 31033:Takifugu rubripes
Length = 73
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 31 caacctggttcaagtaatccaggataggct 60
||||| ||||||||||||||||||||||||
Sbjct: 1 caaccgggttcaagtaatccaggataggct 30
>RF00244;mir-26;BAAF04021096.1/2358-2285 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 52.0 bits (26), Expect = 2e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttacttgca 97
||||||||||||||||||||||| | || | ||||||||| ||| || |||||||||
Sbjct: 8 gttcaagtaatccaggataggctgtttgtatcctggttggcctattcatgattacttgca 67
Query: 98 ctgggt 103
||||||
Sbjct: 68 ctgggt 73
>RF00244;mir-26;AAWZ01018052.1/16808-16735 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 33 acctggttcaagtaatccaggataggctttgtg 65
||||| |||||||||||||||||||||| ||||
Sbjct: 3 acctgcttcaagtaatccaggataggctgtgtg 35
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggatagg 58
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;CAAE01014737.1/605161-605232 99883:Tetraodon
nigroviridis
Length = 72
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 37 ggttcaagtaatccaggataggctt 61
|||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggctt 31
>RF00244;mir-26;BAAF04005282.1/5752-5678 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggatagg 58
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAPN01108773.1/2160-2090 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 ggttcaagtaatccaggataggct 60
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AAFR03065617.1/19793-19721 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 ggttcaagtaatccaggataggct 60
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AAIY01565150.1/1351-1424 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 8 gttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01007655.1/107291-107217 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggctt 61
|||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctt 31
>RF00244;mir-26;AAFR03041753.1/18045-17975 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 71
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;AAWZ01023535.1/24478-24552 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
