miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 149 bits (75), Expect = 8e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 12 ttgcctggttcaagtaatccaggataggttagttcccactagtacggcctattcttggtt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgcctggttcaagtaatccaggataggttagttcccactagtacggcctattcttggtt 60
Query: 72 acttgtttcaggagg 86
|||||||||||||||
Sbjct: 61 acttgtttcaggagg 75
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 13 tgcctggttcaagtaatccaggataggttagttcccactagtacggcctattcttggtta 72
||||||||||||||||||||||||||| | ||| |||| | |||||||||||||| |||
Sbjct: 2 tgcctggttcaagtaatccaggataggctggttaacactggcacggcctattcttgatta 61
Query: 73 cttgtttcagga 84
||||||||||||
Sbjct: 62 cttgtttcagga 73
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 75.8 bits (38), Expect = 9e-14
Identities = 67/74 (90%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggttagttcccact-agtacggcctattcttggtta 72
|||||||||||||||||||||||||| | ||| ||| ||||||||||||||||| |||
Sbjct: 3 gcctggttcaagtaatccaggataggct-gttaccaggcagtacggcctattcttgatta 61
Query: 73 cttgtttcaggagg 86
||||||||||||||
Sbjct: 62 cttgtttcaggagg 75
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggttagttcccactagtacggcctattcttggttac 73
|||||||||||||||||||||||||| | ||| | || | |||||||||||||| ||||
Sbjct: 3 gcctggttcaagtaatccaggataggctggttaaccct-gcacggcctattcttgattac 61
Query: 74 ttgtttcagga 84
|||| ||||||
Sbjct: 62 ttgtgtcagga 72
>RF00244;mir-26;BAAF04005282.1/5752-5678 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggttagttc 46
|||||||||||||||||||||||||||| ||||
Sbjct: 3 gcctggttcaagtaatccaggataggtttgttc 35
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggatagg 39
||||||||||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAPN01398538.1/2438-2512 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggatagg 39
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAFR03066353.1/7590-7517 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggatagg 39
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AADN02000236.1/60671-60744 9031:Gallus gallus
(chicken)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggatagg 39
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;CR388015.14/128267-128194 7955:Danio rerio
(zebrafish)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggatagg 39
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;CAAE01014553.1/1193335-1193409 99883:Tetraodon
nigroviridis
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggttagttc 46
||||| |||||||||||||||||||||| ||||
Sbjct: 3 gcctgattcaagtaatccaggataggtttgttc 35
>RF00244;mir-26;AAVX01037532.1/3546-3619 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggatagg 39
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AANH01008588.1/20720-20793 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ctggttcaagtaatccaggatagg 39
||||||||||||||||||||||||
Sbjct: 5 ctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 46.1 bits (23), Expect = 8e-05
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggttagttcccactagtacggcctattcttggttacttgttt 79
|||||||||||||||||||| | |||| || || |||||||||||| ||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgtttccatct-gtgaggcctattcttgattacttgttt 67
Query: 80 caggagg 86
| |||||
Sbjct: 68 ctggagg 74
>RF00244;mir-26;AAPN01108773.1/2160-2090 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggatagg 39
||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAFR03065617.1/19793-19721 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggatagg 39
||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAIY01565150.1/1351-1424 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggatagg 39
|||| |||||||||||||||||||||
Sbjct: 3 gcctcgttcaagtaatccaggatagg 28
>RF00244;mir-26;CAAE01014542.1/1090180-1090107 99883:Tetraodon
nigroviridis
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggatagg 39
||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggatagg 28
>RF00244;mir-26;CAAE01014737.1/605161-605232 99883:Tetraodon
nigroviridis
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggatagg 39
||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggatagg 28
>RF00244;mir-26;AC098806.3/13416-13344 31033:Takifugu rubripes
Length = 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggatagg 39
||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggatagg 28
>RF00244;mir-26;AANH01005795.1/17049-17122 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggatagg 39
||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggatagg 28
>RF00244;mir-26;BAAE01145746.1/1134-1208 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggatagg 39
||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggatagg 28
