miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;BX664751.9/57144-57062 7955:Danio rerio (zebrafish)
Length = 83
Score = 165 bits (83), Expect = 2e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 24 tttcgtgaggtgcaggacttagctcactctgtgaacagatctcggatatcctatgttcac 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcgtgaggtgcaggacttagctcactctgtgaacagatctcggatatcctatgttcac 60
Query: 84 agtggctaagttccgctcctctg 106
|||||||||||||||||||||||
Sbjct: 61 agtggctaagttccgctcctctg 83
>RF00644;mir-27;ABPM01053951.1/750-668 106582:Maylandia zebra (zebra
mbuna)
Length = 83
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 30 gaggtgcaggacttagctcactctgtgaacagatctcggatatcctatgttcacagtggc 89
|||||| |||||||||||| ||| |||||||| || || |||| |||||||||||||
Sbjct: 7 gaggtgaaggacttagctcgctccgtgaacagttcagtgaagtcctgtgttcacagtggc 66
Query: 90 taagttccgctcctct 105
||||||||||||||||
Sbjct: 67 taagttccgctcctct 82
>RF00644;mir-27;AANH01005378.1/81241-81159 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 61.9 bits (31), Expect = 2e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 30 gaggtgcaggacttagctcactctgtgaacagatctcggatatcctatgttcacagtggc 89
|||| |||||||||||||| ||| |||||||| | || | ||| |||||||||||||
Sbjct: 7 gaggggcaggacttagctcgctccgtgaacagtccagtgaaagcctgtgttcacagtggc 66
Query: 90 taagttccgctcctc 104
|||||||||||||||
Sbjct: 67 taagttccgctcctc 81
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 69/81 (85%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 27 cgtgaggtgcaggacttagctcactctgtgaacagatctcggatatcct---atgttcac 83
|||| |||| ||||||||||| ||||||||||||||| || || ||| ||||||||
Sbjct: 4 cgtgcggtgaaggacttagctaactctgtgaacagatatctgaatgccttcaatgttcac 63
Query: 84 agtggctaagttccgctcctc 104
|||||||||||||||| ||||
Sbjct: 64 agtggctaagttccgcacctc 84
>RF00644;mir-27;CAAB01002712.1/1229-1146 31033:Takifugu rubripes
Length = 84
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgctcctc 104
||||||||||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttccgctcctc 82
>RF00644;mir-27;BAAE01159437.1/1557-1475 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgctcctc 104
||||||||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgctcctc 81
>RF00644;mir-27;AAFR03052006.1/45216-45298 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgctcc 102
||||||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgctcc 79
>RF00644;mir-27;AAWZ01000886.1/15608-15527 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 atgttcacagtggctaagttccgct 100
|||||||||||||||||||||||||
Sbjct: 52 atgttcacagtggctaagttccgct 76
>RF00644;mir-27;AAPN01322484.1/470-549 9258:Ornithorhynchus anatinus
(platypus)
Length = 80
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgctcctc 104
||||||||||||||||||||||| ||||
Sbjct: 51 tgttcacagtggctaagttccgcccctc 78
>RF00644;mir-27;ABRO01400204.1/542-621 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 80
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 atgttcacagtggctaagttccgc 99
||||||||||||||||||||||||
Sbjct: 50 atgttcacagtggctaagttccgc 73
>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttccgc 74
>RF00644;mir-27;ABRQ01065900.1/2710-2791 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 53 tgttcacagtggctaagttccgc 75
