miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;CR847548.8/136623-136702 7955:Danio rerio
(zebrafish)
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 5 ttctagcaggtgcagagcttagctgattggtgaacagtgattgaactctttgttcacagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctagcaggtgcagagcttagctgattggtgaacagtgattgaactctttgttcacagt 60
Query: 65 ggctaagttctgcatctgag 84
||||||||||||||||||||
Sbjct: 61 ggctaagttctgcatctgag 80
>RF00644;mir-27;BAAF04040483.1/6623-6705 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 97.6 bits (49), Expect = 2e-20
Identities = 66/71 (92%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 17 cagagcttagctgattggtgaacagtgattga---actctttgttcacagtggctaagtt 73
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 72
Query: 74 ctgcatctgag 84
||||| |||||
Sbjct: 73 ctgcacctgag 83
>RF00644;mir-27;AAPN01152921.1/1247-1165 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 93.7 bits (47), Expect = 4e-19
Identities = 61/65 (93%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 16 gcagagcttagctgattggtgaacagtgat---tgaactctttgttcacagtggctaagt 72
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 12 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 71
Query: 73 tctgc 77
|||||
Sbjct: 72 tctgc 76
>RF00644;mir-27;AAVX01114775.1/589-508 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 93.7 bits (47), Expect = 4e-19
Identities = 68/74 (91%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattgaact--ctttgttcacagtggcta 69
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 8 aggtgcagagcttagctgattggtgaacagtgattgttgttgctttgttcacagtggcta 67
Query: 70 agttctgcatctga 83
||||||||| ||||
Sbjct: 68 agttctgcacctga 81
>RF00644;mir-27;AAFR03027068.1/11019-11101 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 81.8 bits (41), Expect = 1e-15
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattgaa---ctctttgttcacagtggct 68
|||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||
Sbjct: 8 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 67
Query: 69 aagttctgcatctga 83
|||||||||| ||||
Sbjct: 68 aagttctgcacctga 82
>RF00644;mir-27;CT027840.6/2845-2927 7955:Danio rerio (zebrafish)
Length = 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ggtgcagagcttagctgattggtgaac 39
|||||||||||| ||||||||||||||
Sbjct: 9 ggtgcagagcttggctgattggtgaac 35
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgttcacagtggctaagttct 75
|||||||||||||||||||||||
Sbjct: 52 tttgttcacagtggctaagttct 74
