miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;CU138547.13/91679-91760 7955:Danio rerio
(zebrafish)
Length = 82
Score = 163 bits (82), Expect = 5e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 2 gttgtgtggtgtcaggacttaacccacttgtgaacaatgcatcgaacttcaatgttcaca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgtgtggtgtcaggacttaacccacttgtgaacaatgcatcgaacttcaatgttcaca 60
Query: 62 gtggttaagttctgccgcccct 83
||||||||||||||||||||||
Sbjct: 61 gtggttaagttctgccgcccct 82
>RF00644;mir-27;BAAE01102385.1/538-617 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 atgttcacagtggttaagttctgccgcc 80
||||||||||||||||||||||||||||
Sbjct: 50 atgttcacagtggttaagttctgccgcc 77
>RF00644;mir-27;CAAE01007645.1/64036-63959 99883:Tetraodon
nigroviridis
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tgttcacagtggttaagttctgccgcc 80
|||||||||||||||||||||||||||
Sbjct: 49 tgttcacagtggttaagttctgccgcc 75
>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 cttcaatgttcacagtggttaagttc 73
|||||||||||||||||| |||||||
Sbjct: 51 cttcaatgttcacagtggctaagttc 76
