miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 8 tggaagctgaattcagatggtgccatagagtattttatggcatctagcaccatttgaaat 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggaagctgaattcagatggtgccatagagtattttatggcatctagcaccatttgaaat 60
Query: 68 cagtgttcc 76
|||||||||
Sbjct: 61 cagtgttcc 69
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgttc 75
|||||||||||||||||||||||||||
Sbjct: 44 atctagcaccatttgaaatcagtgttc 70
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgttc 75
|||||||||||||||||||||||||||
Sbjct: 45 atctagcaccatttgaaatcagtgttc 71
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgttc 75
|||||||||||||||||||||||||||
Sbjct: 42 atctagcaccatttgaaatcagtgttc 68
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgtt 74
||||||||||||||||||||||||||
Sbjct: 45 atctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttc 70
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttc 70
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttc 70
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttc 70
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgttc 71
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||||||||
Sbjct: 44 tctagcaccatttgaaatcagtgttc 69
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 catctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||| ||||||
Sbjct: 41 catctagcaccatttgaaatcggtgttc 68
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 catctagcaccatttgaaatcagtgttc 75
||||||||||||||||||||| ||||||
Sbjct: 41 catctagcaccatttgaaatcggtgttc 68
>RF00074;mir-29;AANH01001435.1/148652-148722 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tctagcaccatttgaaatcagtgttcc 76
||||||||||| |||||||||||||||
Sbjct: 45 tctagcaccatatgaaatcagtgttcc 71
>RF00074;mir-29;ABRR01582801.1/1311-1240 30538:Lama pacos (alpaca)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 atctagcaccatttgaaatcagtgtt 74
||||||||||||||||||||| ||||
Sbjct: 45 atctagcaccatttgaaatcaatgtt 70
