miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 141 bits (71), Expect = 2e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 9 cagatgctggtttcacatggtggtttagatgtgttctaccaaagtctagcaccatttgaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagatgctggtttcacatggtggtttagatgtgttctaccaaagtctagcaccatttgaa 60
Query: 69 atcagtgttct 79
|||||||||||
Sbjct: 61 atcagtgttct 71
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 9 cagatgctggtttcacatggtggtttagatgtgttctac-caaagtctagcaccatttga 67
|||| ||||||||||| ||||||||||||||||| || | || ||||||||||||||||
Sbjct: 1 cagaagctggtttcacgtggtggtttagatgtgt-ctcctcatcgtctagcaccatttga 59
Query: 68 aatcagtgttct 79
||||||||||||
Sbjct: 60 aatcagtgttct 71
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 14 gctggtttcacatggtggtttagatgtgttctaccaaagtctagcaccatttgaaatcag 73
|||||||||| ||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 6 gctggtttcatgtggtggtttagatgtgtctttctgttgtctagcaccatttgaaatcag 65
Query: 74 tgttct 79
||||||
Sbjct: 66 tgttct 71
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 gtctagcaccatttgaaatcagtgttct 79
||||||||||||||||||||||||||||
Sbjct: 44 gtctagcaccatttgaaatcagtgttct 71
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 52 gtctagcaccatttgaaatcagtgttct 79
||||||||||||||||||||||||||||
Sbjct: 43 gtctagcaccatttgaaatcagtgttct 70
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttct 79
|||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttct 71
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttct 79
|||||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgttct 72
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttct 79
|||||||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtgttct 69
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttct 79
|||||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgttct 72
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttc 78
||||||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtgttc 68
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgtt 77
|||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttct 79
||||||||||||||||||| |||||||
Sbjct: 43 tctagcaccatttgaaatcggtgttct 69
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttct 79
||||||||||||||||||| |||||||
Sbjct: 43 tctagcaccatttgaaatcggtgttct 69
>RF00074;mir-29;AANH01001435.1/148652-148722 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 tctagcaccatttgaaatcagtgttc 78
||||||||||| ||||||||||||||
Sbjct: 45 tctagcaccatatgaaatcagtgttc 70
