miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;CR356236.12/41533-41474 7955:Danio rerio
(zebrafish)
Length = 60
Score = 119 bits (60), Expect = 5e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctggtgcacatgatggagctttcagtcggatgtttgca 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctggtgcacatgatggagctttcagtcggatgtttgca 60
>RF00131;mir-30;BAAF04079177.1/18181-18241 8090:Oryzias latipes
(Japanese medaka)
Length = 61
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctggtgcaca-tgatggagctttcagtcggatgtttgc 69
|||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctggtgttgatttctggggctttcagtcggatgtttgc 60
Query: 70 a 70
|
Sbjct: 61 a 61
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 56.0 bits (28), Expect = 7e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctggtgcacatgatggagctttcagtcggatgtttgca 70
|||||||||||| |||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctg-tgcatgtggacgagctttcagtcggatgtttgca 59
>RF00131;mir-30;ABQF01061949.1/5737-5797 59729:Taeniopygia guttata
Length = 61
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctgg 36
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgg 26
>RF00131;mir-30;CAAB01000598.1/36787-36849 31033:Takifugu rubripes
Length = 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctgg 36
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgg 26
>RF00131;mir-30;BAAF04002319.1/6281-6343 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctgg 36
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctgg 26
>RF00131;mir-30;AAKN02055704.1/76333-76394 10141:Cavia porcellus
(domestic guinea pig)
Length = 62
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;AAWZ01013131.1/23739-23678 28377:Anolis
carolinensis (green anole)
Length = 62
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;AADN02043797.1/10718-10657 9031:Gallus gallus
(chicken)
Length = 62
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;AANH01002293.1/5342-5405 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatccttgactggaagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 gatggagctttcagtcggatgtttgca 70
||||| |||||||||||||||||||||
Sbjct: 36 gatggggctttcagtcggatgtttgca 62
