miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;CAAK05021429.1/259-339 7955:Danio rerio
(zebrafish)
Length = 81
Score = 143 bits (72), Expect = 3e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gaagagatggcaagatgttggcatagctgttaatgtttatgggcctgctatgcctccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gaagagatggcaagatgttggcatagctgttaatgtttatgggcctgctatgcctccata 66
Query: 61 ttgccatttctg 72
||||||||||||
Sbjct: 67 ttgccatttctg 78
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agagatggcaagatgttggcatagctgtt 31
||||| |||||||||||||||||||||||
Sbjct: 9 agagaaggcaagatgttggcatagctgtt 37
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctgttaa 33
|||||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgttaa 39
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctgttaa 33
|||||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgttaa 39
>RF00661;mir-31;ABEP02037830.1/78220-78140 7739:Branchiostoma
floridae (Florida lancelet)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 atggcaagatgttggcatagctgtt 31
|||||||||||||||||||||||||
Sbjct: 13 atggcaagatgttggcatagctgtt 37
>RF00661;mir-31;BAAE01170693.1/1745-1803 8090:Oryzias latipes
(Japanese medaka)
Length = 59
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctgtt 31
|||||||||||||||||||||||
Sbjct: 1 ggcaagatgttggcatagctgtt 23
>RF00661;mir-31;ABEG01018473.1/17089-17170 135651:Caenorhabditis
brenneri
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tggcaagatgttggcatagctg 29
||||||||||||||||||||||
Sbjct: 14 tggcaagatgttggcatagctg 35
>RF00661;mir-31;AAGJ02119479.1/16120-16038 7668:Strongylocentrotus
purpuratus
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctgt 30
||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgt 36
>RF00661;mir-31;AACT01023302.1/10702-10781 51511:Ciona savignyi
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 atggcaagatgttggcatagct 28
||||||||||||||||||||||
Sbjct: 13 atggcaagatgttggcatagct 34
>RF00661;mir-31;AABS01000260.1/39485-39404 7719:Ciona intestinalis
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 atggcaagatgttggcatagct 28
||||||||||||||||||||||
Sbjct: 13 atggcaagatgttggcatagct 34
>RF00661;mir-31;ABIR01000861.1/40343-40422 6334:Trichinella
spiralis
Length = 80
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;AAQA01000036.1/3121-3003 6279:Brugia malayi
Length = 119
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;ABLE02017251.1/2159-2248 281687:Caenorhabditis
japonica
Length = 90
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;AF025464.1/2448-2533 6239:Caenorhabditis elegans
Length = 86
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;AAGD02002064.1/2567-2487 31234:Caenorhabditis
remanei
Length = 81
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;ABEG01018473.1/18882-18994 135651:Caenorhabditis
brenneri
Length = 113
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;ABKE01002614.1/3132-3048 54126:Pristionchus
pacificus
Length = 85
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 ggcaagatgttggcatagctg 29
|||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctg 35
>RF00661;mir-31;ABKQ02012146.1/10104-10027 377270:Anopheles
gambiae S
Length = 78
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tggcaagatgttggcatagct 28
|||||||||||||||||||||
Sbjct: 14 tggcaagatgttggcatagct 34
