miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 145 bits (73), Expect = 1e-34
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 14 ttctctggcagtgtcttagctggttgttgtgtggagtgagaacgaagcaatcagcaagta 73
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagcaagta 68
Query: 74 tactgccgcagaaactc 90
|||||||||||||||||
Sbjct: 69 tactgccgcagaaactc 85
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 107 bits (54), Expect = 3e-23
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 ttctctggcagtgtcttagctggttgttgtgtggagtgagaacgaagcaatcagcaagta 73
||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgtgcagtcagaa-aaagcaatcagcaagta 67
Query: 74 tactgccgcagaaa 87
||||||||||||||
Sbjct: 68 tactgccgcagaaa 81
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 6 gtgagtggttctctggcagtgtcttagctggttgttgtgtggagt-gagaacgaagcaat 64
||||||| |||| |||||||||||||||||||||||||| | | | | || ||||||||
Sbjct: 1 gtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaat 60
Query: 65 cagcaagtatactgcc 80
||||||||||||||||
Sbjct: 61 cagcaagtatactgcc 76
