miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 7 ctttctgcgcaggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttctgcgcaggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtc 60
Query: 67 ccggcctgtaaaggattg 84
||||||||||||||||||
Sbjct: 61 ccggcctgtaaaggattg 78
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 gcaggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtcccggcctg 74
|||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9 gcaggtggggattagtagcaatgctgtgtacca-gaaggtattgcacttgtcccggcctg 67
Query: 75 taaagga 81
|| ||||
Sbjct: 68 tatagga 74
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 51 aggtattgcacttgtcccggcctgtaaagga 81
|||||||||||||||||||||||||||||||
Sbjct: 44 aggtattgcacttgtcccggcctgtaaagga 74
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 7 ctttctgcgcaggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtc 66
|||||||| |||| ||||| ||| |||||||||||||| | |||||||||||||||
Sbjct: 1 ctttctgcacaggctgggaccggtcgcaatgctgtgtgtctgtgtggtattgcacttgtc 60
Query: 67 ccggcctgt 75
|||||||||
Sbjct: 61 ccggcctgt 69
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 7 ctttctgcgcaggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtc 66
|||||| | ||||||||||| || ||||||||||| |||| |||||||||||||||
Sbjct: 1 ctttctacacaggttgggatcagttgcaatgctgtgcgtttctgtggtattgcacttgtc 60
Query: 67 ccggcctgt 75
|||||||||
Sbjct: 61 ccggcctgt 69
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 7 ctttctgcgcaggttgggattggtagcaatgctgtgtgttt-tgaa-ggtattgcacttg 64
|||||| | |||||||||||| || |||||||||||| | | || | |||||||||||||
Sbjct: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtttctctgtatggtattgcacttg 60
Query: 65 tcccggcctgt 75
|||||||||||
Sbjct: 61 tcccggcctgt 71
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 gaaggtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||||||
Sbjct: 42 gaaggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 7 ctttctgcgcaggttgggattggtagcaatgctgtgtgttttgaa-ggtattgcacttgt 65
||||||| ||||||||||| ||| |||||||| |||| || | ||||||||||||||
Sbjct: 1 ctttctgtgcaggttgggagaggtggcaatgctctgtgcttggggtggtattgcacttgt 60
Query: 66 cccggcctgt 75
||||||||||
Sbjct: 61 cccggcctgt 70
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 ggtattgcacttgtcccggcctgt 75
||||||||||||||||||||||||
Sbjct: 46 ggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 ggtattgcacttgtcccggcctgt 75
||||||||||||||||||||||||
Sbjct: 46 ggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 53 gtattgcacttgtcccggcctgt 75
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 53 gtattgcacttgtcccggcctgt 75
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 50 gtattgcacttgtcccggcctgt 72
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 51 gtattgcacttgtcccggcctgt 73
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 50 gtattgcacttgtcccggcctgt 72
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctgt 75
|||||||||||||||||||||||
Sbjct: 45 gtattgcacttgtcccggcctgt 67
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gtattgcacttgtcccggcctg 74
||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctg 70
