miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00669;mir-96;AL590150.2/106766-106689 7955:Danio rerio
(zebrafish)
Length = 78
Score = 83.8 bits (42), Expect = 5e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 52 atatataccttgagcaattatgtgtagtgccaatatgggaca 93
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 atatataccttgagcaattatgtgtagtgccaatatgggaca 78
>RF00669;mir-96;CAAB01003233.1/13798-13721 31033:Takifugu rubripes
Length = 78
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 61 ttgagcaattatgtgtagtgccaatatgggaca 93
||||||||| |||||||||||||||||||||||
Sbjct: 46 ttgagcaatcatgtgtagtgccaatatgggaca 78
>RF00669;mir-96;CAAB01000329.1/61906-61829 31033:Takifugu rubripes
Length = 78
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 55 tataccttgagcaattatgtgtagtgccaatat 87
||||| |||||||||||||||||||||||||||
Sbjct: 40 tatactttgagcaattatgtgtagtgccaatat 72
>RF00669;mir-96;AAVX01227232.1/474-397 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 ttgagcaattatgtgtagtgccaatat 87
|||||||||||||||||||||||||||
Sbjct: 46 ttgagcaattatgtgtagtgccaatat 72
>RF00669;mir-96;BAAF04047675.1/12047-12125 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatgggaca 93
|||||||| |||||| ||||||||||||||||
Sbjct: 48 tgagcaatcatgtgtggtgccaatatgggaca 79
>RF00669;mir-96;ABRQ01279950.1/675-752 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
