miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;CR936972.7/90514-90443 7955:Danio rerio
(zebrafish)
Length = 72
Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 7 tgtcattaacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcattaacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatg 60
Query: 67 ggtctctgtctc 78
||||||||||||
Sbjct: 61 ggtctctgtctc 72
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 14 aacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatgggtctct 73
|||||||||||||||||||||| || | ||| |||||||||||| ||| |||||||||
Sbjct: 8 aacccgtagatccgatcttgtggaaaatctgacggcacaagctcgcctctgtgggtctct 67
Query: 74 gtc 76
|||
Sbjct: 68 gtc 70
>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
(chicken)
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 14 aacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatgggtctct 73
|||||||||||||||||||||| | | | | ||||||||||| |||||||||||| |
Sbjct: 8 aacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggtctgt 67
Query: 74 gtc 76
|||
Sbjct: 68 gtc 70
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aacccgtagatccgatcttgtg 35
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtg 29
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aacccgtagatccgatcttgtg 35
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtg 29
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aacccgtagatccgatcttgtg 35
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtg 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 caagctcgattctatgggtctctgtc 76
||||||||||||| ||||||||||||
Sbjct: 45 caagctcgattctgtgggtctctgtc 70
