miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 5 tgtcacaaacccgtagatccgatcttgtggcgtaatcggcaacccaagctcgattctgtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcacaaacccgtagatccgatcttgtggcgtaatcggcaacccaagctcgattctgtg 60
Query: 65 ggtctctgtcac 76
||||||||||||
Sbjct: 61 ggtctctgtcac 72
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
|||||||||||||||||||||||||||
Sbjct: 4 cacaaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 acaaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||||
Sbjct: 5 acaaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
(chicken)
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgatcttgtg 29
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAHX01054266.1/78515-78584 10116:Rattus norvegicus
(Norway rat)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWZ01029956.1/4910-4979 28377:Anolis carolinensis
(green anole)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABQF01045478.1/2452-2521 59729:Taeniopygia guttata
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;CR936972.7/90514-90443 7955:Danio rerio
(zebrafish)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtg 33
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgatcttgtg 29
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 caagctcgattctgtgggtctctgtc 74
||||||||||||| ||||||||||||
Sbjct: 45 caagctcgattctatgggtctctgtc 70