miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 139 bits (70), Expect = 7e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 17 tgacacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctatagg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctatagg 60
Query: 77 tatctgtctg 86
||||||||||
Sbjct: 61 tatctgtctg 70
>RF00104;mir-10;AAHX01054266.1/78515-78584 10116:Rattus norvegicus
(Norway rat)
Length = 70
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 79
|||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgctgaccatgcacacaagcttgtgtctataggtat 63
Query: 80 ctgtctg 86
||||||
Sbjct: 64 gtgtctg 70
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 83.8 bits (42), Expect = 4e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 79
||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtggtgactggctgcgcaagctcgtatctataggtat 63
Query: 80 ctgtct 85
|||||
Sbjct: 64 gtgtct 69
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 79
||||||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtggtgacagt-cacacaagtttgcatctacaggtat 62
Query: 80 ctgtctg 86
||||||
Sbjct: 63 gtgtctg 69
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 75.8 bits (38), Expect = 9e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 79
|||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtgtctataggtat 63
Query: 80 ctgtct 85
|||||
Sbjct: 64 gtgtct 69
>RF00104;mir-10;ABQF01045478.1/2452-2521 59729:Taeniopygia guttata
Length = 70
Score = 75.8 bits (38), Expect = 9e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggt 77
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtgctcatattccacacaagcttgtatctataggt 61
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 79
||||||||||||||||||||||||||||| || ||||||||||||| ||| | |||||
Sbjct: 4 cacaaacccgtagatccgaacttgtggtggtagttcacacaagcttgtgtctgtgggtat 63
Query: 80 ctgtctg 86
||||||
Sbjct: 64 gtgtctg 70
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 79
||||||||||||||||||||||||||||| || | |||||||| || |||||||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctataggtat 63
Query: 80 ctgtctg 86
||||||
Sbjct: 64 gtgtctg 70
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 79
||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |
Sbjct: 4 cacaaacccgtagatccgaacttgtggtgctcttctgcacaagcttgtgtctataggtct 63
Query: 80 ctgtctg 86
||||||
Sbjct: 64 gtgtctg 70
>RF00104;mir-10;AAWZ01029956.1/4910-4979 28377:Anolis carolinensis
(green anole)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtg 45
||||||||||||||||||||||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 21 acaaacccgtagatccgaacttgtggtga 49
|||||||||||||||||| ||||||||||
Sbjct: 5 acaaacccgtagatccgatcttgtggtga 33
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 17 tgacacaaacccgtagatccgaacttgtggtga 49
||||| |||||||||||||||| ||||||||||
Sbjct: 1 tgacataaacccgtagatccgatcttgtggtga 33
>RF00104;mir-10;BAAF04027544.1/3636-3567 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 caaacccgtagatccgaacttgtg 45
||||||||||||||||||||||||
Sbjct: 6 caaacccgtagatccgaacttgtg 29
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtgg 46
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 cacaaacccgtagatccgaacttgtgg 46
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
floridae (Florida lancelet)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 aaacccgtagatccgaacttgtg 45
|||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AADG05003176.1/74572-74649 7460:Apis mellifera
(honey bee)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtgg 46
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAAB01008964.1/2125227-2125303 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 aaacccgtagatccgaacttgtg 45
|||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAJJ01000960.1/12300-12233 7070:Tribolium
castaneum (red flour beetle)
Length = 68
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtgg 46
|||||||||||||||||||||||
Sbjct: 7 aacccgtagatccgaacttgtgg 29
>RF00104;mir-10;ABIR01000029.1/41879-41953 6334:Trichinella
spiralis
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtg 45
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAQA01000457.1/25556-25481 6279:Brugia malayi
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtg 45
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABAV01011074.1/24648-24715 45351:Nematostella
vectensis (starlet sea anemone)
Length = 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 acccgtagatccgaacttgtgg 46
||||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtgg 30
>RF00104;mir-10;CAAB01004143.1/16784-16858 31033:Takifugu rubripes
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtg 45
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWU01000325.1/1900-1975 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtg 45
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAGE02002929.1/307465-307539 7159:Aedes aegypti
(yellow fever mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtg 45
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABJB010963031.1/703-629 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 aacccgtagatccgaacttgtg 45
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
