miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
(zebrafish)
Length = 70
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctatagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctatagg 60
Query: 64 tatgtgtctg 73
||||||||||
Sbjct: 61 tatgtgtctg 70
>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctatagg 63
|||||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtgactggctgcgcaagctcgtatctatagg 60
Query: 64 tatgtgtct 72
|||||||||
Sbjct: 61 tatgtgtct 69
>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
(European shrew)
Length = 70
Score = 85.7 bits (43), Expect = 7e-17
Identities = 66/71 (92%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtg-tctctgtgcacaagctcgtgtctatag 62
|||||||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtgctct-tctgcacaagcttgtgtctatag 59
Query: 63 gtatgtgtctg 73
|| ||||||||
Sbjct: 60 gtctgtgtctg 70
>RF00104;mir-10;AAHX01054266.1/78515-78584 10116:Rattus norvegicus
(Norway rat)
Length = 70
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctatagg 63
||||||||||||||||||||||||||||| || | || |||||||| |||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtgctgaccatgcacacaagcttgtgtctatagg 60
Query: 64 tatgtgtctg 73
||||||||||
Sbjct: 61 tatgtgtctg 70
>RF00104;mir-10;AANU01118946.1/11450-11381 9544:Macaca mulatta
(rhesus monkey)
Length = 70
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctatagg 63
||||||||||||||||||||||||||||||| | | ||||||||| |||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtattagtccgcacaagcttgtgtctatagg 60
Query: 64 tatgtgtct 72
|||||||||
Sbjct: 61 tatgtgtct 69
>RF00104;mir-10;AAWZ01029956.1/4910-4979 28377:Anolis carolinensis
(green anole)
Length = 70
Score = 77.8 bits (39), Expect = 2e-14
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtgtctctg-tgcacaagctcgtgtctatag 62
||||||||||||||||||||||||||||| | ||| || | |||||||| ||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtgct-tctatgttacacaagcttgtgtctatag 59
Query: 63 gtatgtgtctg 73
|||||||||||
Sbjct: 60 gtatgtgtctg 70
>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
(zebrafish)
Length = 70
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 7 cacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctataggtat 66
||||||||||||||||||||||||||||| || | |||||||| || |||||||||||
Sbjct: 4 cacaaacccgtagatccgaacttgtggtgactgtccacacaagcttgtatctataggtat 63
Query: 67 gtgtctg 73
||||||
Sbjct: 64 ctgtctg 70
>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
floridae (Florida lancelet)
Length = 70
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtgtctctgtgcacaagctcgtgtctat 60
||||| ||||||||||||||||||||||| || || || |||||||||||||||||
Sbjct: 1 tgccataaacccgtagatccgaacttgtgttgcttcagttcacaagctcgtgtctat 57
>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
(little brown bat)
Length = 69
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtg 35
||||||||||||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtg 32
>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtggtg 35
||||||||||||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtggtg 32
>RF00104;mir-10;ABQF01045478.1/2452-2521 59729:Taeniopygia guttata
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttgtg 32
|||||||||||||||||||||||||||||
Sbjct: 1 tgccacaaacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
(tammar wallaby)
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 acaaacccgtagatccgaacttgtggtg 35
|||||||||||||||||| |||||||||
Sbjct: 5 acaaacccgtagatccgatcttgtggtg 32
>RF00104;mir-10;BAAF04027544.1/3636-3567 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 caaacccgtagatccgaacttgtg 32
||||||||||||||||||||||||
Sbjct: 6 caaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWZ01007717.1/44986-44914 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 tgccacaaacccgtagatccgaacttg 30
||||| |||||||||||||||||||||
Sbjct: 1 tgccataaacccgtagatccgaacttg 27
>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 cacaaacccgtagatccgaacttgtgg 33
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 cacaaacccgtagatccgaacttgtgg 33
||||||||||||||||||| |||||||
Sbjct: 4 cacaaacccgtagatccgatcttgtgg 30
>RF00104;mir-10;AADG05003176.1/74572-74649 7460:Apis mellifera
(honey bee)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtgg 33
|||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAAB01008964.1/2125227-2125303 180454:Anopheles
gambiae str. PEST
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtg 32
|||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAJJ01000960.1/12300-12233 7070:Tribolium
castaneum (red flour beetle)
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtgg 33
|||||||||||||||||||||||
Sbjct: 7 aacccgtagatccgaacttgtgg 29
>RF00104;mir-10;ABIR01000029.1/41879-41953 6334:Trichinella
spiralis
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAQA01000457.1/25556-25481 6279:Brugia malayi
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABAV01011074.1/24648-24715 45351:Nematostella
vectensis (starlet sea anemone)
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 acccgtagatccgaacttgtgg 33
||||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtgg 30
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
mouse)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 aaacccgtagatccgaacttgtggtg 35
|||||||||||||||| |||||||||
Sbjct: 7 aaacccgtagatccgatcttgtggtg 32
>RF00104;mir-10;CAAB01004143.1/16784-16858 31033:Takifugu rubripes
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAWU01000325.1/1900-1975 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAGE02002929.1/307465-307539 7159:Aedes aegypti
(yellow fever mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;ABJB010963031.1/703-629 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 aacccgtagatccgaacttgtg 32
||||||||||||||||||||||
Sbjct: 8 aacccgtagatccgaacttgtg 29
>RF00104;mir-10;AAZO01005184.1/23040-23119 121224:Pediculus
humanus corporis (human body louse)
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 acccgtagatccgaacttgtg 32
|||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtg 29
>RF00104;mir-10;ABLF01019923.1/4047-3973 7029:Acyrthosiphon pisum
(pea aphid)
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 acccgtagatccgaacttgtg 32
|||||||||||||||||||||
Sbjct: 9 acccgtagatccgaacttgtg 29
