miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00253;mir-101;BAAF04077052.1/5406-5332 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 109 bits (55), Expect = 5e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 4 tgccctggttcagttatcacagtgctgatgctgtccatcttaaaggtacagtactgtgat 63
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 tgccctggttcagttatcacagtgctgatgctgtccccatagaaggtacagtactgtgat 60
Query: 64 aactgaaggatggct 78
|||||||||||||||
Sbjct: 61 aactgaaggatggct 75
>RF00253;mir-101;AADN02012457.1/2688-2762 9031:Gallus gallus
(chicken)
Length = 75
Score = 107 bits (54), Expect = 2e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 4 tgccctggttcagttatcacagtgctgatgctgtccatcttaaaggtacagtactgtgat 63
|||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 tgccctggctcagttatcacagtgctgatgctgtctcttgtaaaggtacagtactgtgat 60
Query: 64 aactgaaggatggc 77
||||||||||||||
Sbjct: 61 aactgaaggatggc 74
>RF00253;mir-101;AADN02066347.1/1501-1427 9031:Gallus gallus
(chicken)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 45 aaaggtacagtactgtgataactgaaggatgg 76
||||||||||||||||||||||||||| ||||
Sbjct: 42 aaaggtacagtactgtgataactgaagaatgg 73
>RF00253;mir-101;AC120147.8/122464-122390 10090:Mus musculus
(house mouse)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 45 aaaggtacagtactgtgataactgaaggatggc 77
|||||||||||||||||||| |||||| |||||
Sbjct: 42 aaaggtacagtactgtgatagctgaagaatggc 74
