miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 6 ctggtctgtcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggtctgtcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtac 60
Query: 66 agggctatgagagacccg 83
||||||||||||||||||
Sbjct: 61 agggctatgagagacccg 78
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 99.6 bits (50), Expect = 6e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 14 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 73
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 9 tcagcctctttacggtgctgccttgtggcgtctcgatcaagcagcattgtacagggctat 68
Query: 74 ga 75
||
Sbjct: 69 ga 70
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 14 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 73
|||||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 9 tcagcctctttatgatgctgccttgtggcgtcttgatcaagcagcattgtacagggctat 68
Query: 74 ga 75
||
Sbjct: 69 ga 70
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 20 tctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 75
||||||| |||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 15 tctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 75.8 bits (38), Expect = 8e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 14 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 73
||||| ||||||| |||||| ||||| | ||| |||||||||||||||||||||||||||
Sbjct: 9 tcagcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctat 68
Query: 74 ga 75
||
Sbjct: 69 ga 70
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 28 gtgctgccttgtggaatctggatcaagcagcattgtacagggctatgag 76
|||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 23 gtgctgccttgttgcatgtggatcaagcagcattgtacagggctatgag 71
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 16 agcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 75
||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 11 agcctctttacagtgctgccttgtctgatcaggttcaagcagcattgtacagggctatga 70
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 16 agcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 75
||||||||||| ||||||||||| || | | |||||||||||||||||||||||||||
Sbjct: 11 agcctctttacaatgctgccttgtagacccagaatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 11 ctgtcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggc 70
|||| ||| ||||||| ||| |||||||||| || |||||||||||||||||||||||
Sbjct: 6 ctgtgagcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggc 65
Query: 71 tat 73
|||
Sbjct: 66 tat 68
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 14 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 73
||||| ||||||| |||||||||||| | || | ||||||||||||||||||||||||
Sbjct: 9 tcagcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctat 68
Query: 74 ga 75
||
Sbjct: 69 ga 70
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 14 tcagcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctat 73
||||| ||||||| ||| |||||||||| || | ||||||||||||||||||||||||
Sbjct: 9 tcagcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 16 agcctctttacggtgctgccttgtggaatctggatcaagcagcattgtacagggctatga 75
||||||||||| |||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 11 agcctctttacagtgctgccttgtcttctcgcgttcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 gatcaagcagcattgtacagggctatga 75
||||||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tcaagcagcattgtacagggctatga 75
||||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctatga 70
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 gatcaagcagcattgtacagggctat 73
||||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 gatcaagcagcattgtacagggct 71
||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggct 66
