miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 4 gtgtgctctgagcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtac 63
||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 1 gtgtgctgtgagcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtac 60
Query: 64 agggctatcac 74
|||||||||||
Sbjct: 61 agggctatcac 71
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 105 bits (53), Expect = 9e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 14 agcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggctatca 73
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggctatca 70
Query: 74 cagca 78
||||
Sbjct: 71 aagca 75
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 93.7 bits (47), Expect = 4e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 15 gcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggctatca 73
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggctatca 70
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 9 ctctgagcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggc 68
||||| |||||| |||||||||| ||||| || ||| |||||||||||||||||||||||
Sbjct: 6 ctctgggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggc 65
Query: 69 t 69
|
Sbjct: 66 t 66
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 15 gcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggctat 71
|||||||||||||| || |||||| | || |||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 14 agcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggctat 71
||||||||||||||| || ||||| |||| || ||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggctat 68
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 14 agcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggctat 71
||||||||||||||| || ||||| |||| ||||||||||||||||||||||||||
Sbjct: 11 agcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 15 gcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggctat 71
|||||| ||||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 12 gcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 65.9 bits (33), Expect = 8e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 15 gcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtacagggctat 71
|||||||||||||| || ||||| |||| ||||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggctat 68
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 5 tgtgctctgagcttctttacagtgttgtcttgtggcatggagatcaagcagcattgtaca 64
|||||| | ||||||||||||||| || ||||| || | | |||||||||||||||||
Sbjct: 2 tgtgctttcagcttctttacagtgctgccttgttgcgttcatgtcaagcagcattgtaca 61
Query: 65 gggctat 71
|||||||
Sbjct: 62 gggctat 68
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggctatcacagca 78
|||||||||||||||||||||||| ||||||
Sbjct: 45 tcaagcagcattgtacagggctatgacagca 75
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 gatcaagcagcattgtacagggctat 71
||||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggctat 68
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 47 atcaagcagcattgtacagggctatcacagcaca 80
||||||||||||||||||||||||| | ||||||
Sbjct: 44 atcaagcagcattgtacagggctatgaaagcaca 77
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 gatcaagcagcattgtacagggctat 71
||||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 gatcaagcagcattgtacagggctat 71
||||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggctat 68
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggctat 71
||||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggctat 68
