miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00129;mir-103;BX511087.12/72494-72571 7955:Danio rerio
(zebrafish)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 4 ggccactctgggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggccactctgggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtac 60
Query: 64 agggctttcagcgtgtac 81
||||||||||||||||||
Sbjct: 61 agggctttcagcgtgtac 78
>RF00129;mir-103;AAVX01541574.1/765-688 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 91.7 bits (46), Expect = 1e-18
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 12 tgggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 9 tgggcttctttacagtgttgccttgtagcttggagatcaagcagcattgtacagggct 66
>RF00129;mir-103;BAAE01010024.1/828-751 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 77.8 bits (39), Expect = 2e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 15 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
|||||| |||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggcgatcaagcagcattgtacagggct 66
>RF00129;mir-103;ABRO01336156.1/1674-1751 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 14 ggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
||||||||||||||| |||||||| || || ||||||||||||||||||||||||
Sbjct: 11 ggcttctctacagtgctgccttgttgcatgtggatcaagcagcattgtacagggct 66
>RF00129;mir-103;AADN02027745.1/21215-21292 9031:Gallus gallus
(chicken)
Length = 78
Score = 69.9 bits (35), Expect = 5e-12
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 15 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
|||||| |||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgttgccttgtggcatggagttcaagcagcattgtacagggct 66
>RF00129;mir-103;AADN02035922.1/14217-14140 9031:Gallus gallus
(chicken)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 14 ggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
||||||| ||||||| |||||||| || | ||||||||||||||||||||||||
Sbjct: 11 ggcttctttacagtgctgccttgttgcatatggatcaagcagcattgtacagggct 66
>RF00129;mir-103;AAVX01046194.1/322-245 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 14 ggcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
||||||| ||||||| |||||||| | || ||||||||||||||||||||||||
Sbjct: 11 ggcttctttacagtgctgccttgtgacgtgaagatcaagcagcattgtacagggct 66
>RF00129;mir-103;AAGU02403797.1/4408-4485 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 15 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
|||||| ||||||| ||||||||||| | | ||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgccttgtagcattcaggtcaagcagcattgtacagggct 66
>RF00129;mir-103;AAVX01197460.1/556-479 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 15 gcttctctacagtgttgccttgtagcctggtgatcaagcagcattgtacagggct 69
|||||| ||||||| || |||||||| | ||||||||||||||||||||||||
Sbjct: 12 gcttctttacagtgctgacttgtagcatccggatcaagcagcattgtacagggct 66
>RF00129;mir-103;BAAF04068432.1/1846-1923 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 tgatcaagcagcattgtacagggct 69
|||||||||||||||||||||||||
Sbjct: 42 tgatcaagcagcattgtacagggct 66
>RF00129;mir-103;BX323842.8/48404-48481 7955:Danio rerio
(zebrafish)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 gatcaagcagcattgtacagggct 69
||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggct 66
>RF00129;mir-103;AANH01004124.1/31115-31038 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 gatcaagcagcattgtacagggct 69
||||||||||||||||||||||||
Sbjct: 43 gatcaagcagcattgtacagggct 66
>RF00129;mir-103;CT573279.9/199469-199546 7955:Danio rerio
(zebrafish)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 atcaagcagcattgtacagggct 69
|||||||||||||||||||||||
Sbjct: 44 atcaagcagcattgtacagggct 66
>RF00129;mir-103;AADN02048857.1/398-321 9031:Gallus gallus
(chicken)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggct 69
||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggct 66
>RF00129;mir-103;AANH01006686.1/13404-13327 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggct 69
||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggct 66
>RF00129;mir-103;BAAE01256445.1/2223-2146 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 tcaagcagcattgtacagggct 69
||||||||||||||||||||||
Sbjct: 45 tcaagcagcattgtacagggct 66
