miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcaca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcaca 60
Query: 63 ctaaatagccacgg 76
||||||||||||||
Sbjct: 61 ctaaatagccacgg 74
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 87.7 bits (44), Expect = 2e-17
Identities = 64/69 (92%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 5 gagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatcaca 62
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatccaatc---cgtcaaacgccattatcaca 59
Query: 63 ctaaatagc 71
|||||||||
Sbjct: 60 ctaaatagc 68
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatcatctgtc-gtcaaacgccattatcac 61
||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtttc--ctgcctatcaaacgccattatcac 58
Query: 62 actaaatagc 71
||||||||||
Sbjct: 59 actaaatagc 68
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 71.9 bits (36), Expect = 1e-12
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 11 tggagtgtgacaatggtgtttgta-tcatctgtcgtcaaacgccattatcacactaaata 69
|||||||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtaatca-ctgacatcaaacgccattatcacactaaata 67
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgt 33
||||||| |||||||||||||||||||||||
Sbjct: 1 cagagctctggagtgtgacaatggtgtttgt 31
