miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 3 ctctcgctgtacgtgttcacagtggaccttgatttattgtatttcaattaaggcacgcgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctcgctgtacgtgttcacagtggaccttgatttattgtatttcaattaaggcacgcgg 60
Query: 63 tgaatgccaacagcacagcc 82
||||||||||||||||||||
Sbjct: 61 tgaatgccaacagcacagcc 80
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 85.7 bits (43), Expect = 8e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 14 cgtgttcacagtggaccttgatttattgtatttcaattaaggcacgcggtgaatgccaa 72
||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgtcttacaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 14 cgtgttcacagtggaccttgatttattgtatttcaattaaggcacgcggtgaatgccaa 72
||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 14 cgtgttcacagtggaccttgatttattgtatttcaattaaggcacgcggtgaatgccaa 72
||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 71.9 bits (36), Expect = 1e-12
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 14 cgtgttcacagtggaccttgatttattgtattt-caattaaggcacgcggtgaatgccaa 72
||||||||||| ||||||||||||| ||| | | ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtgaatgccaa 71
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 69.9 bits (35), Expect = 5e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttattgt-atttcaattaaggcacgcggtgaatgccaa 72
|||||||||||||||||||||||| | | | | ||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaa 71
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 63.9 bits (32), Expect = 3e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 14 cgtgttcacagtggaccttgatttatt-gtatttcaattaaggcacgcggtgaatgccaa 72
||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttattagcaatacaattaaggcacgcggtgaatgccaa 71
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 60.0 bits (30), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 14 cgtgttcacagtggaccttgatttattgtattt-caattaaggcacgcggtgaatgccaa 72
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagtggaccttgatttcatgtggacacaattaaggcacgcggtgaatgccaa 71
Query: 73 cagcacagcc 82
||| |||||
Sbjct: 72 gagcccagcc 81
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 tcaattaaggcacgcggtgaatgccaa 72
|||||||||||||||||||||||||||
Sbjct: 44 tcaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 caattaaggcacgcggtgaatgccaa 72
||||||||||||||||||||||||||
Sbjct: 47 caattaaggcacgcggtgaatgccaa 72
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 caattaaggcacgcggtgaatgccaa 72
||||||||||||||||||||||||||
Sbjct: 46 caattaaggcacgcggtgaatgccaa 71
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 caattaaggcacgcggtgaatgccaa 72
||||||||||||||||||||||||||
Sbjct: 47 caattaaggcacgcggtgaatgccaa 72
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 caattaaggcacgcggtgaatgccaa 72
||||||||||||||||||||||||||
Sbjct: 47 caattaaggcacgcggtgaatgccaa 72
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 caattaaggcacgcggtgaatgccaa 72
||||||||||||||||||||||||||
Sbjct: 46 caattaaggcacgcggtgaatgccaa 71
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 47 caattaaggcacgcggtgaatgccaa 72
||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 aattaaggcacgcggtgaatgccaa 72
|||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaac 73
|||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaac 70
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaac 73
|||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaac 70
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 caattaaggcacgcggtgaatgc 69
|||||||||||||||||||||||
Sbjct: 47 caattaaggcacgcggtgaatgc 69
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaacagca 77
|||||||||||||||||||||| ||||
Sbjct: 48 taaggcacgcggtgaatgccaagagca 74
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 ttaaggcacgcggtgaatgcca 71
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaa 74
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 41 taaggcacgcggtgaatgccaa 62
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaa 68
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaa 73
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
(domestic silkworm)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaa 73
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaa 76
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaa 73
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaa 73
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaa 67
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaa 67
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
scapularis (black-legged tick)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 taaggcacgcggtgaatgccaa 72
||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaa 71
