miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 151 bits (76), Expect = 2e-36
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 8 gctctttgtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaa 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gctctttgtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaa 65
Query: 68 tgccaagagagaagcc 83
||||||||||||||||
Sbjct: 66 tgccaagagagaagcc 81
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 95.6 bits (48), Expect = 8e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
|||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaag 72
Query: 75 agag 78
||||
Sbjct: 73 agag 76
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 93.7 bits (47), Expect = 3e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 10 tctttgtgttcacagtggaccttgatttaatt-tcaatacaattaaggcacgcggtgaat 68
|||| |||||||||| |||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 8 tcttcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaat 67
Query: 69 gccaagagaga 79
|||||||||||
Sbjct: 68 gccaagagaga 78
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
|||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtgaatgccaag 72
Query: 75 aga 77
|||
Sbjct: 73 aga 75
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtca-tacaattaaggcacgcggtgaatgccaag 71
Query: 75 ag 76
||
Sbjct: 72 ag 73
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 91.7 bits (46), Expect = 1e-18
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtca-tacaattaaggcacgcggtgaatgccaag 71
Query: 75 ag 76
||
Sbjct: 72 ag 73
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 89.7 bits (45), Expect = 5e-18
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatt-tcaatacaattaaggcacgcggtgaatgccaa 73
|||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgccaa 72
Query: 74 gagag 78
|||||
Sbjct: 73 gagag 77
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
|||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacggcggaccttgatttattagcaatacaattaaggcacgcggtgaatgccaag 72
Query: 75 agag 78
||||
Sbjct: 73 agag 76
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 85.7 bits (43), Expect = 8e-17
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
|||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagcggaccttgatttaatgtct-tacaattaaggcacgcggtgaatgccaag 71
Query: 75 aga 77
|||
Sbjct: 72 aga 74
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttcatgtggacacaattaaggcacgcggtgaatgccaag 72
Query: 75 ag 76
||
Sbjct: 73 ag 74
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 75.8 bits (38), Expect = 8e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatt-tcaatacaattaaggcacgcggtgaatgccaa 73
|||||||||| |||||||||||||| | || |||||||||||||||||||||||||| ||
Sbjct: 13 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgctaa 72
Query: 74 ga 75
||
Sbjct: 73 ga 74
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 75.8 bits (38), Expect = 8e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 74
||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttcaaaacagt-caattaaggcacgcggtgaatgccaag 71
Query: 75 agagaa 80
||||||
Sbjct: 72 agagaa 77
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 69.9 bits (35), Expect = 5e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaa 73
|||||||||||||||||||||||| | | | | ||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttattgt-atttcaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 47 acaattaaggcacgcggtgaatgccaagagag 78
||||||||||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaagagag 76
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 60.0 bits (30), Expect = 5e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 10 tctttgtgttcacagtggaccttgatttaatttc-aatacaattaaggcacgcggtgaat 68
|||| |||||||| ||| |||||||||| ||| || ||||||||||||||||||||||
Sbjct: 8 tcttagtgttcactgtgatccttgatttatattctaaaacaattaaggcacgcggtgaat 67
Query: 69 gccaag 74
||||||
Sbjct: 68 gccaag 73
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 caattaaggcacgcggtgaatgccaaga 75
||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaaga 72
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 aattaaggcacgcggtgaatgccaag 74
||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagaga 77
||||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaagaga 78
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 12 tttgtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgcc 71
||||||||||| | |||||||||||||| ||| || |||||||||||| |||||||||
Sbjct: 10 tttgtgttcactgcagaccttgatttaatgtcac-acgattaaggcacgcagtgaatgcc 68
Query: 72 aa 73
||
Sbjct: 69 aa 70
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaagag 71
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
(domestic silkworm)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaagag 79
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaagag 72
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
scapularis (black-legged tick)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaagag 76
|||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaaga 75
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 ttaaggcacgcggtgaatgcca 72
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaa 73
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaa 73
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaa 73
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaa 73
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaa 73
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 taaggcacgcggtgaatgccaa 73
||||||||||||||||||||||
Sbjct: 41 taaggcacgcggtgaatgccaa 62
