miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio (zebrafish)
Length = 81
Score = 121 bits (61), Expect = 2e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 34 ctctgcgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaat 93
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7 ctctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaat 66
Query: 94 gccaagaga 102
|||||||||
Sbjct: 67 gccaagaga 75
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 119 bits (60), Expect = 9e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 33 gctctgcgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaa 92
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6 gctctccgtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtgaa 65
Query: 93 tgccaagagaag 104
||||||||||||
Sbjct: 66 tgccaagagaag 77
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 113 bits (57), Expect = 6e-25
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 39 cgtgttcacagcggaccttgatttaa-tgtccatacaattaaggcacgcggtgaatgcca 97
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 98 agaga 102
|||||
Sbjct: 72 agaga 76
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 113 bits (57), Expect = 6e-25
Identities = 64/65 (98%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 39 cgtgttcacagcggaccttgatttaa-tgtccatacaattaaggcacgcggtgaatgcca 97
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 98 agaga 102
|||||
Sbjct: 72 agaga 76
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 111 bits (56), Expect = 2e-24
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 34 ctctgcgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaat 93
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaat 65
Query: 94 gccaagag 101
||||||||
Sbjct: 66 gccaagag 73
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 111 bits (56), Expect = 2e-24
Identities = 66/68 (97%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 34 ctctgcgtgttcacagcggaccttgatttaa-tgtccatacaattaaggcacgcggtgaa 92
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7 ctctgcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 66
Query: 93 tgccaaga 100
||| ||||
Sbjct: 67 tgctaaga 74
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 109 bits (55), Expect = 9e-24
Identities = 62/63 (98%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 39 cgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaatgccaa 98
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaatgccaa 70
Query: 99 gag 101
|||
Sbjct: 71 gag 73
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 105 bits (53), Expect = 1e-22
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 34 ctctgcgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaat 93
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgatttaatgtct-tacaattaaggcacgcggtgaat 65
Query: 94 gccaagaga 102
|||||||||
Sbjct: 66 gccaagaga 74
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 101 bits (51), Expect = 2e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 40 gtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaatgccaag 99
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 72
Query: 100 aga 102
|||
Sbjct: 73 aga 75
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 39 cgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaatgccaa 98
||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttattagcaatacaattaaggcacgcggtgaatgccaa 71
Query: 99 gagaagaatc 108
|||| |||||
Sbjct: 72 gagaggaatc 81
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 85.7 bits (43), Expect = 1e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 39 cgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaatgccaa 98
||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagtggaccttgatttcatgtggacacaattaaggcacgcggtgaatgccaa 71
Query: 99 gag 101
|||
Sbjct: 72 gag 74
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 67.9 bits (34), Expect = 3e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 29 tctcgctctgcgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcgg 88
||||||| | ||||||||||| ||||||||||||| ||| | ||||||||||||||||
Sbjct: 2 tctcgctgtacgtgttcacagtggaccttgatttattgtattt-caattaaggcacgcgg 60
Query: 89 tgaatgccaa 98
||||||||||
Sbjct: 61 tgaatgccaa 70
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 65.9 bits (33), Expect = 1e-10
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 39 cgtgttcacagcggaccttgatttaa-tgtccatacaattaaggcacgcggtgaatgcca 97
|||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 3 cgtgttcacagcgggacctgatttaaatgtccatacaat-aaggcacgcggtgaatgcca 61
Query: 98 a 98
|
Sbjct: 62 a 62
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 72 acaattaaggcacgcggtgaatgccaagagaagaatc 108
||||||||||||||||||||||||||||||| |||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaagagaggaatc 81
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 61.9 bits (31), Expect = 2e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 40 gtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtgaatgccaa 98
|||||||| || |||||||||||||||| || || |||||||||||| |||||||||||
Sbjct: 13 gtgttcactgcagaccttgatttaatgt-cacacgattaaggcacgcagtgaatgccaa 70
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 73 caattaaggcacgcggtgaatgccaagaga 102
||||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaagaga 74
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 72 acaattaaggcacgcggtgaatgccaag 99
||||||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgccaag 73
>RF00239;mir-124;AAVX01290765.1/186-107 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 56.0 bits (28), Expect = 1e-07
Identities = 59/68 (86%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 28 ttctcgctctgcgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcg 87
|||||||||| ||||||| ||||| ||||||||||||| |||||||||||||| ||
Sbjct: 1 ttctcgctctcagtgttcatggcggatcttgatttaatgtgg-tacaattaaggcacacg 59
Query: 88 gtgaatgc 95
||||||||
Sbjct: 60 gtgaatgc 67
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 caattaaggcacgcggtgaatgccaaga 100
||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaaga 72
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagagaa 103
|||||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaagagaa 79
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 74 aattaaggcacgcggtgaatgccaag 99
||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71
>RF00239;mir-124;AAQQ01613377.1/480-556 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 77
Score = 52.0 bits (26), Expect = 2e-06
Identities = 52/58 (89%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 34 ctctgcgtgttcacagcggaccttgatttaatgtccatacaattaaggcacgcggtga 91
|||||||||| ||||||||||| |||||| ||||| |||| ||| |||||||||||||
Sbjct: 7 ctctgcgtgtccacagcggacc-tgattttatgtctatac-atttaggcacgcggtga 62
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaagag 71
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori (domestic
silkworm)
Length = 83
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaagag 79
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium castaneum
(red flour beetle)
Length = 79
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaagag 72
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes scapularis
(black-legged tick)
Length = 81
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaagag 101
|||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaaga 100
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ttaaggcacgcggtgaatgcca 97
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaa 98
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaa 98
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaa 98
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaa 98
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 taaggcacgcggtgaatgccaa 98
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
