miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 17 ccgccactctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgccactctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcg 60
Query: 77 gtgaatgccaagagaggggtc 97
|||||||||||||||||||||
Sbjct: 61 gtgaatgccaagagaggggtc 81
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 109 bits (55), Expect = 8e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 19 gccactctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggt 78
||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 3 gccactcctcgtgttcacggcggaccttgatttattagcaatacaattaaggcacgcggt 62
Query: 79 gaatgccaagagagg 93
|||||||||||||||
Sbjct: 63 gaatgccaagagagg 77
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 99.6 bits (50), Expect = 8e-21
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 28 cgtgttcacggcggaccttgatttaa-tatccatacaattaaggcacgcggtgaatgcca 86
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 87 agagag 92
||||||
Sbjct: 72 agagag 77
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 99.6 bits (50), Expect = 8e-21
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 28 cgtgttcacggcggaccttgatttaa-tatccatacaattaaggcacgcggtgaatgcca 86
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 87 agagag 92
||||||
Sbjct: 72 agagag 77
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 97.6 bits (49), Expect = 3e-20
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 23 ctctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaat 82
|||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaat 65
Query: 83 gccaagagagggg 95
|||||||| ||||
Sbjct: 66 gccaagagcgggg 78
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 97.6 bits (49), Expect = 3e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 23 ctctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaat 82
|||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtgaat 66
Query: 83 gccaagaga 91
|||||||||
Sbjct: 67 gccaagaga 75
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 95.6 bits (48), Expect = 1e-19
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 23 ctctgcgtgttcacggcggaccttgatttaa-tatccatacaattaaggcacgcggtgaa 81
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 7 ctctgcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaa 66
Query: 82 tgccaaga 89
||| ||||
Sbjct: 67 tgctaaga 74
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 95.6 bits (48), Expect = 1e-19
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 29 gtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaag 88
|||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 72
Query: 89 agag 92
||||
Sbjct: 73 agag 76
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 93.7 bits (47), Expect = 5e-19
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 28 cgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaa 87
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaatgccaa 70
Query: 88 gag 90
|||
Sbjct: 71 gag 73
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 89.7 bits (45), Expect = 7e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 23 ctctgcgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaat 82
|||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 7 ctctccgtgttcacagcggaccttgatttaatgtct-tacaattaaggcacgcggtgaat 65
Query: 83 gccaagaga 91
|||||||||
Sbjct: 66 gccaagaga 74
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 69.9 bits (35), Expect = 7e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 28 cgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaa 87
||||||||| | |||||||||||| || | | |||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagtggaccttgatttcatgtggacacaattaaggcacgcggtgaatgccaa 71
Query: 88 gag 90
|||
Sbjct: 72 gag 74
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 61 acaattaaggcacgcggtgaatgccaagagagg 93
|||||||||||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaagagagg 77
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 62 caattaaggcacgcggtgaatgccaagagag 92
|||||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaagagag 75
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 58.0 bits (29), Expect = 3e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 29 gtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaag 88
||||||||||||| |||| |||||| || | |||||||||||||||||||||||||||
Sbjct: 13 gtgttcacggcggtccttaatttaacattg-tgcaattaaggcacgcggtgaatgccaag 71
Query: 89 a 89
|
Sbjct: 72 a 72
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 acaattaaggcacgcggtgaatgccaag 88
||||||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgccaag 73
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 29 gtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaa 87
|||||||| || |||||||||||||| || | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcactgcagaccttgatttaatgtc-acacgattaaggcacgcagtgaatgccaa 70
>RF00239;mir-124;AAVX01290765.1/186-107 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 54.0 bits (27), Expect = 4e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 29 gtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaag 88
||||||| |||||| ||||||||||| | |||||||||||||| |||||||||| |||
Sbjct: 13 gtgttcatggcggatcttgatttaatgtgg-tacaattaaggcacacggtgaatgctaag 71
Query: 89 agagggg 95
||||||
Sbjct: 72 ggagggg 78
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 aattaaggcacgcggtgaatgccaag 88
||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagaga 91
||||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaagaga 78
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 caattaaggcacgcggtgaatgccaa 87
||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 50.1 bits (25), Expect = 6e-06
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 28 cgtgttcacggcggaccttgatttaa-tatccatacaattaaggcacgcggtgaatgcca 86
||||||||| |||| | |||||||| | |||||||||| ||||||||||||||||||||
Sbjct: 3 cgtgttcacagcgggacctgatttaaatgtccatacaat-aaggcacgcggtgaatgcca 61
Query: 87 a 87
|
Sbjct: 62 a 62
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaagag 71
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
(domestic silkworm)
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaagag 79
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaagag 72
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
scapularis (black-legged tick)
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaagag 90
|||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaaga 89
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ttaaggcacgcggtgaatgcca 86
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaa 87
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaa 87
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaa 87
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaa 87
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 taaggcacgcggtgaatgccaa 87
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
